Hb_062273_010

Information

Type -
Description -
Location Contig62273: 6418-7081
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G124000g
description hypothetical protein
nr
ID NP_943666.1
description ATP synthase F0 subunit 9 [Chara vulgaris]
swissprot
ID P69422
description ATP synthase subunit 9, mitochondrial OS=Vicia faba GN=ATP9 PE=3 SV=1
trembl
ID Q7YAN5
description ATP synthase subunit 9, mitochondrial OS=Chara vulgaris GN=atp9 PE=3 SV=1
Gene Ontology
ID GO:0045263
description atpase subunit 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51615: 5032-5446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062273_010 0.0 - - ATP synthase F0 subunit 9 [Chara vulgaris]
2 Hb_072212_020 0.1058581215 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
3 Hb_042463_020 0.1379481471 - - conserved hypothetical protein [Ricinus communis]
4 Hb_034168_070 0.1380661448 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
5 Hb_062192_030 0.1408980057 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
6 Hb_104735_020 0.146712489 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
7 Hb_189099_020 0.1471136343 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
8 Hb_034168_010 0.1566938601 - - hypothetical protein [Azospirillum sp. CAG:260]
9 Hb_003125_100 0.1614746201 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
10 Hb_042463_070 0.1753359018 - - 60S ribosomal protein L16, putative [Ricinus communis]
11 Hb_088080_030 0.1779115686 - - ribosomal protein S4 [Hevea brasiliensis]
12 Hb_062192_020 0.1850304459 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
13 Hb_034455_010 0.1853425421 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003032_090 0.1878049805 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
15 Hb_013420_010 0.1888079874 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002551_030 0.1891181648 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
17 Hb_041813_030 0.1944168925 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
18 Hb_156746_010 0.1958774941 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
19 Hb_053998_020 0.1974962994 - - -
20 Hb_003362_020 0.1988754788 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_062273_010 Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_042463_020--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_042463_020--Hb_104735_020 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_041813_030 Hb_041813_030 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_062192_030--Hb_189099_020 Hb_062192_030--Hb_041813_030 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_062192_030--Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_000518_040 Hb_000518_040 Hb_104735_020--Hb_000518_040 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_189099_020--Hb_088080_030 Hb_189099_020--Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_189099_020--Hb_000920_020 Hb_189099_020--Hb_041813_030 Hb_189099_020--Hb_001338_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.879756 1.59067 0.891221 0.565044 0.457654 0.207232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.07794 0.573805 19.4275

CAGE analysis