Hb_062317_020

Information

Type -
Description -
Location Contig62317: 6466-7124
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062317_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001320_020 0.0352398447 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_001496_050 0.1299339684 - - yth domain-containing protein, putative [Ricinus communis]
4 Hb_000968_070 0.1740006973 - - -
5 Hb_007520_070 0.2099815117 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
6 Hb_007793_030 0.2337179468 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
7 Hb_034359_010 0.2388204774 - - -
8 Hb_000028_380 0.2505949235 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
9 Hb_002311_260 0.2608085603 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
10 Hb_000473_160 0.2626083842 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
11 Hb_143398_020 0.2641393731 - - PREDICTED: 21 kDa protein [Populus euphratica]
12 Hb_006237_030 0.2673485465 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000659_090 0.2677134175 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
14 Hb_001355_060 0.2698547468 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_012538_010 0.2716210777 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_095937_010 0.275329423 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_002255_080 0.2773950827 - - -
18 Hb_002973_120 0.2806780548 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
19 Hb_006274_020 0.282691434 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_002013_030 0.2847219103 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_062317_020 Hb_062317_020 Hb_001320_020 Hb_001320_020 Hb_062317_020--Hb_001320_020 Hb_001496_050 Hb_001496_050 Hb_062317_020--Hb_001496_050 Hb_000968_070 Hb_000968_070 Hb_062317_020--Hb_000968_070 Hb_007520_070 Hb_007520_070 Hb_062317_020--Hb_007520_070 Hb_007793_030 Hb_007793_030 Hb_062317_020--Hb_007793_030 Hb_034359_010 Hb_034359_010 Hb_062317_020--Hb_034359_010 Hb_001320_020--Hb_001496_050 Hb_001320_020--Hb_000968_070 Hb_001320_020--Hb_007520_070 Hb_001320_020--Hb_007793_030 Hb_000028_380 Hb_000028_380 Hb_001320_020--Hb_000028_380 Hb_001496_050--Hb_000968_070 Hb_008055_030 Hb_008055_030 Hb_001496_050--Hb_008055_030 Hb_001496_050--Hb_000028_380 Hb_000811_090 Hb_000811_090 Hb_001496_050--Hb_000811_090 Hb_000968_070--Hb_007793_030 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_041813_010 Hb_041813_010 Hb_007520_070--Hb_041813_010 Hb_007520_070--Hb_000968_070 Hb_000076_050 Hb_000076_050 Hb_007520_070--Hb_000076_050 Hb_102602_020 Hb_102602_020 Hb_007520_070--Hb_102602_020 Hb_006483_120 Hb_006483_120 Hb_007793_030--Hb_006483_120 Hb_008484_020 Hb_008484_020 Hb_007793_030--Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_007793_030--Hb_003291_030 Hb_182651_020 Hb_182651_020 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120 Hb_105123_020 Hb_105123_020 Hb_034359_010--Hb_105123_020 Hb_034359_010--Hb_001320_020 Hb_007718_020 Hb_007718_020 Hb_034359_010--Hb_007718_020 Hb_074670_010 Hb_074670_010 Hb_034359_010--Hb_074670_010 Hb_056012_020 Hb_056012_020 Hb_034359_010--Hb_056012_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0990143 0 0.0754093 0 0.103616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.132417 0.396479

CAGE analysis