Hb_062447_010

Information

Type -
Description -
Location Contig62447: 1298-5717
Sequence    

Annotation

kegg
ID rcu:RCOM_0526220
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_012090975.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SJE5
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0526220 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062447_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
2 Hb_012799_040 0.1680788788 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
3 Hb_001660_130 0.1728405637 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
4 Hb_000402_180 0.1831054442 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_002783_130 0.1844312718 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
6 Hb_134022_010 0.1878404282 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_000156_080 0.1890639504 - - Potassium channel KAT2, putative [Ricinus communis]
8 Hb_036492_020 0.1897685062 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
9 Hb_000538_170 0.1900021768 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
10 Hb_008810_030 0.1914796197 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
11 Hb_001623_410 0.1931119097 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
12 Hb_001247_010 0.1956274261 - - galactinol synthase [Manihot esculenta]
13 Hb_021254_020 0.1957981633 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000365_340 0.1965032998 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
15 Hb_000110_040 0.1989681651 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
16 Hb_000656_260 0.1993224249 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
17 Hb_007193_030 0.199357652 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
18 Hb_007218_060 0.1999089821 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
19 Hb_001369_020 0.2004521357 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
20 Hb_004393_030 0.2025119411 - - CBL-interacting protein kinase 6 [Populus trichocarpa]

Gene co-expression network

sample Hb_062447_010 Hb_062447_010 Hb_012799_040 Hb_012799_040 Hb_062447_010--Hb_012799_040 Hb_001660_130 Hb_001660_130 Hb_062447_010--Hb_001660_130 Hb_000402_180 Hb_000402_180 Hb_062447_010--Hb_000402_180 Hb_002783_130 Hb_002783_130 Hb_062447_010--Hb_002783_130 Hb_134022_010 Hb_134022_010 Hb_062447_010--Hb_134022_010 Hb_000156_080 Hb_000156_080 Hb_062447_010--Hb_000156_080 Hb_000656_260 Hb_000656_260 Hb_012799_040--Hb_000656_260 Hb_000032_090 Hb_000032_090 Hb_012799_040--Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_012799_040--Hb_004393_030 Hb_036492_020 Hb_036492_020 Hb_012799_040--Hb_036492_020 Hb_012799_040--Hb_001660_130 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110 Hb_001660_130--Hb_002783_130 Hb_001660_130--Hb_004393_030 Hb_021254_020 Hb_021254_020 Hb_001660_130--Hb_021254_020 Hb_001660_130--Hb_000402_180 Hb_008810_030 Hb_008810_030 Hb_001660_130--Hb_008810_030 Hb_000402_180--Hb_036492_020 Hb_000402_180--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_000402_180--Hb_003929_040 Hb_070613_010 Hb_070613_010 Hb_000402_180--Hb_070613_010 Hb_000402_180--Hb_008810_030 Hb_002783_130--Hb_070613_010 Hb_000418_060 Hb_000418_060 Hb_002783_130--Hb_000418_060 Hb_004109_150 Hb_004109_150 Hb_002783_130--Hb_004109_150 Hb_006002_020 Hb_006002_020 Hb_002783_130--Hb_006002_020 Hb_002783_130--Hb_134022_010 Hb_004724_300 Hb_004724_300 Hb_134022_010--Hb_004724_300 Hb_134022_010--Hb_008810_030 Hb_134022_010--Hb_036492_020 Hb_001821_050 Hb_001821_050 Hb_134022_010--Hb_001821_050 Hb_134022_010--Hb_004393_030 Hb_000156_080--Hb_004109_150 Hb_011457_080 Hb_011457_080 Hb_000156_080--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_000156_080--Hb_004218_080 Hb_000156_080--Hb_000402_180 Hb_002030_100 Hb_002030_100 Hb_000156_080--Hb_002030_100 Hb_007193_030 Hb_007193_030 Hb_000156_080--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141269 0.0957209 0.0464322 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.022179 0.00460017 0.0494741

CAGE analysis