Hb_062537_010

Information

Type -
Description -
Location Contig62537: 1896-5645
Sequence    

Annotation

kegg
ID rcu:RCOM_1439490
description hypothetical protein
nr
ID KDP28113.1
description hypothetical protein JCGZ_13884 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13884 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51658: 1147-5688 , PASA_asmbl_51659: 1154-2166 , PASA_asmbl_51661: 1173-2085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062537_010 0.0 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
2 Hb_000025_190 0.0641081544 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
3 Hb_001348_020 0.0717292887 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
4 Hb_000115_150 0.0737500874 - - PREDICTED: IST1 homolog [Jatropha curcas]
5 Hb_023001_040 0.0797899055 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
6 Hb_003988_050 0.0800020672 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
7 Hb_000258_240 0.0810967329 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
8 Hb_002042_150 0.0842336093 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
9 Hb_000120_370 0.0868239158 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
10 Hb_001633_080 0.0871879141 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
11 Hb_005648_010 0.0874253714 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
12 Hb_001104_230 0.0887060778 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
13 Hb_011628_060 0.0913155269 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
14 Hb_000917_130 0.091359413 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
15 Hb_086085_020 0.0919079916 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
16 Hb_004880_150 0.0920775179 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
17 Hb_003878_150 0.0929009537 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
18 Hb_007481_010 0.0940373721 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_000179_270 0.0946134903 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
20 Hb_066842_010 0.0948001644 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_062537_010 Hb_062537_010 Hb_000025_190 Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_000115_150 Hb_000115_150 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_003988_050 Hb_003988_050 Hb_062537_010--Hb_003988_050 Hb_000258_240 Hb_000258_240 Hb_062537_010--Hb_000258_240 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_000025_190--Hb_003988_050 Hb_000025_190--Hb_000115_150 Hb_000228_110 Hb_000228_110 Hb_001348_020--Hb_000228_110 Hb_011628_060 Hb_011628_060 Hb_001348_020--Hb_011628_060 Hb_000111_320 Hb_000111_320 Hb_001348_020--Hb_000111_320 Hb_000392_430 Hb_000392_430 Hb_001348_020--Hb_000392_430 Hb_001348_020--Hb_023001_040 Hb_000120_370 Hb_000120_370 Hb_000115_150--Hb_000120_370 Hb_000115_150--Hb_003988_050 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_000115_150--Hb_005648_010 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_003988_050--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000258_240--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93842 1.52475 2.79542 6.23215 1.51316 2.81034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7951 3.65638 2.68655 4.88091 3.15136

CAGE analysis