Hb_062671_010

Information

Type -
Description -
Location Contig62671: 3-788
Sequence    

Annotation

kegg
ID pop:POPTR_0005s033602
description hypothetical protein
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062671_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_060658_010 0.2200932958 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_131872_010 0.2238299142 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_006452_240 0.2263379116 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
5 Hb_027760_090 0.230537712 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_000300_310 0.2316103428 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
7 Hb_012760_110 0.2318887108 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
8 Hb_006717_080 0.2332121038 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_002849_160 0.2338883813 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
10 Hb_007546_030 0.2365860366 - - transcription cofactor, putative [Ricinus communis]
11 Hb_002226_050 0.2420490573 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
12 Hb_001080_030 0.2445651235 - - AMP dependent ligase, putative [Ricinus communis]
13 Hb_001341_020 0.2450166863 - - Uncharacterised protein [Bordetella pertussis]
14 Hb_000041_010 0.2514235908 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
15 Hb_012707_020 0.2534151638 - - -
16 Hb_004319_060 0.2539838623 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_000014_190 0.2564531965 - - Phytoene dehydrogenase, putative [Ricinus communis]
18 Hb_009296_050 0.2569636258 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_000261_300 0.2584160661 - - -
20 Hb_000406_190 0.2609417494 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_062671_010 Hb_062671_010 Hb_060658_010 Hb_060658_010 Hb_062671_010--Hb_060658_010 Hb_131872_010 Hb_131872_010 Hb_062671_010--Hb_131872_010 Hb_006452_240 Hb_006452_240 Hb_062671_010--Hb_006452_240 Hb_027760_090 Hb_027760_090 Hb_062671_010--Hb_027760_090 Hb_000300_310 Hb_000300_310 Hb_062671_010--Hb_000300_310 Hb_012760_110 Hb_012760_110 Hb_062671_010--Hb_012760_110 Hb_000574_250 Hb_000574_250 Hb_060658_010--Hb_000574_250 Hb_002311_260 Hb_002311_260 Hb_060658_010--Hb_002311_260 Hb_000414_180 Hb_000414_180 Hb_060658_010--Hb_000414_180 Hb_000454_160 Hb_000454_160 Hb_060658_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_060658_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_060658_010--Hb_069147_010 Hb_001341_020 Hb_001341_020 Hb_131872_010--Hb_001341_020 Hb_131102_010 Hb_131102_010 Hb_131872_010--Hb_131102_010 Hb_002226_050 Hb_002226_050 Hb_131872_010--Hb_002226_050 Hb_007054_050 Hb_007054_050 Hb_131872_010--Hb_007054_050 Hb_003944_020 Hb_003944_020 Hb_131872_010--Hb_003944_020 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_027760_090--Hb_012760_110 Hb_004657_060 Hb_004657_060 Hb_027760_090--Hb_004657_060 Hb_007919_040 Hb_007919_040 Hb_027760_090--Hb_007919_040 Hb_007472_080 Hb_007472_080 Hb_027760_090--Hb_007472_080 Hb_000811_010 Hb_000811_010 Hb_027760_090--Hb_000811_010 Hb_074506_010 Hb_074506_010 Hb_027760_090--Hb_074506_010 Hb_000014_190 Hb_000014_190 Hb_000300_310--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_000300_310--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_000300_310--Hb_078477_060 Hb_000300_310--Hb_002226_050 Hb_001811_080 Hb_001811_080 Hb_000300_310--Hb_001811_080 Hb_000157_110 Hb_000157_110 Hb_000300_310--Hb_000157_110 Hb_000215_360 Hb_000215_360 Hb_012760_110--Hb_000215_360 Hb_000001_130 Hb_000001_130 Hb_012760_110--Hb_000001_130 Hb_003185_100 Hb_003185_100 Hb_012760_110--Hb_003185_100 Hb_000204_070 Hb_000204_070 Hb_012760_110--Hb_000204_070 Hb_073171_100 Hb_073171_100 Hb_012760_110--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_012760_110--Hb_001691_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377322 1.41738 0.230193 0.186075 0.0301457 0.766633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.690906 0.380272 0.196212 2.22222 3.26565

CAGE analysis