Hb_062858_010

Information

Type -
Description -
Location Contig62858: 24-305
Sequence    

Annotation

kegg
ID bvg:104902833
description 17.1 kDa class II heat shock protein-like
nr
ID XP_002516106.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID P05477
description 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1
trembl
ID B9RQT7
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0706490 PE=3 SV=1
Gene Ontology
ID GO:0005737
description kda class ii heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51763: 53-275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062858_010 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_073171_060 0.1468393255 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_000055_100 0.146963947 - - polyprotein [Oryza australiensis]
4 Hb_000368_130 0.1470063519 - - conserved hypothetical protein [Ricinus communis]
5 Hb_088224_010 0.1473515875 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_000245_240 0.1474671145 - - -
7 Hb_000085_110 0.1475608984 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
8 Hb_010272_020 0.1476750557 - - hypothetical protein VITISV_030841 [Vitis vinifera]
9 Hb_150498_010 0.15336222 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_004888_050 0.1556522904 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_007586_020 0.1561896486 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_003362_010 0.1584842945 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
13 Hb_157349_010 0.1658957782 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_001274_010 0.1701718868 - - -
15 Hb_007639_010 0.1743733358 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
16 Hb_000483_170 0.1834533219 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
17 Hb_129358_010 0.1897845568 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
18 Hb_000589_430 0.1910269572 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
19 Hb_001792_010 0.2063246029 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
20 Hb_002641_150 0.2068511921 - - PREDICTED: stachyose synthase-like [Citrus sinensis]

Gene co-expression network

sample Hb_062858_010 Hb_062858_010 Hb_073171_060 Hb_073171_060 Hb_062858_010--Hb_073171_060 Hb_000055_100 Hb_000055_100 Hb_062858_010--Hb_000055_100 Hb_000368_130 Hb_000368_130 Hb_062858_010--Hb_000368_130 Hb_088224_010 Hb_088224_010 Hb_062858_010--Hb_088224_010 Hb_000245_240 Hb_000245_240 Hb_062858_010--Hb_000245_240 Hb_000085_110 Hb_000085_110 Hb_062858_010--Hb_000085_110 Hb_010272_020 Hb_010272_020 Hb_073171_060--Hb_010272_020 Hb_073171_060--Hb_000055_100 Hb_073171_060--Hb_000368_130 Hb_073171_060--Hb_088224_010 Hb_073171_060--Hb_000245_240 Hb_073171_060--Hb_000085_110 Hb_000055_100--Hb_000368_130 Hb_000055_100--Hb_088224_010 Hb_000055_100--Hb_000245_240 Hb_000055_100--Hb_000085_110 Hb_000055_100--Hb_010272_020 Hb_000368_130--Hb_088224_010 Hb_000368_130--Hb_000245_240 Hb_000368_130--Hb_000085_110 Hb_000368_130--Hb_010272_020 Hb_088224_010--Hb_000245_240 Hb_088224_010--Hb_000085_110 Hb_088224_010--Hb_010272_020 Hb_000245_240--Hb_000085_110 Hb_000245_240--Hb_010272_020 Hb_000085_110--Hb_010272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.356257 5.77747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.26609 0

CAGE analysis