Hb_063047_010

Information

Type -
Description -
Location Contig63047: 318-2296
Sequence    

Annotation

kegg
ID rcu:RCOM_1977610
description peroxisomal targeting signal type 1 (pts1) receptor, putative
nr
ID XP_002535309.1
description peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
swissprot
ID Q9FMA3
description Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1
trembl
ID B9TAP0
description Peroxisomal targeting signal type 1 (Pts1) receptor, putative OS=Ricinus communis GN=RCOM_1977610 PE=4 SV=1
Gene Ontology
ID GO:0044763
description peroxisome biogenesis protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51815: 1433-1724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063047_010 0.0 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
2 Hb_001609_010 0.0630951068 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
3 Hb_001040_160 0.0705276474 - - glutaredoxin, grx, putative [Ricinus communis]
4 Hb_001871_040 0.0744869813 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
5 Hb_000316_030 0.0751289725 - - zinc finger protein, putative [Ricinus communis]
6 Hb_110364_010 0.0785949919 - - gamma-tubulin complex component, putative [Ricinus communis]
7 Hb_004881_050 0.0797780917 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
8 Hb_000152_740 0.0807817978 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
9 Hb_001307_140 0.0813888342 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
10 Hb_000017_340 0.0822954356 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
11 Hb_005635_010 0.0842226558 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
12 Hb_000136_150 0.0851796035 - - hypothetical protein VITISV_038366 [Vitis vinifera]
13 Hb_000372_040 0.0873506852 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000370_030 0.087455768 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
15 Hb_000390_060 0.0878144923 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
16 Hb_001019_170 0.0919693625 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
17 Hb_003434_060 0.092128219 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
18 Hb_000076_080 0.094097661 - - PREDICTED: protein MOS2 [Jatropha curcas]
19 Hb_000317_440 0.0954775634 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
20 Hb_002986_050 0.0958632229 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]

Gene co-expression network

sample Hb_063047_010 Hb_063047_010 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_001040_160 Hb_001040_160 Hb_063047_010--Hb_001040_160 Hb_001871_040 Hb_001871_040 Hb_063047_010--Hb_001871_040 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_001609_010--Hb_001040_160 Hb_001609_010--Hb_000316_030 Hb_001609_010--Hb_001871_040 Hb_001609_010--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_001609_010--Hb_000457_060 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_001307_140 Hb_001307_140 Hb_110364_010--Hb_001307_140 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_110364_010--Hb_005635_010 Hb_110364_010--Hb_001871_040 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3525 10.5072 4.22047 5.47541 21.0263 43.4252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7556 6.54305 12.835 8.66426 5.67929

CAGE analysis