Hb_063090_010

Information

Type -
Description -
Location Contig63090: 431-2671
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11830g
description POPTRDRAFT_575469; regulator of chromosome condensation family protein
nr
ID XP_012091959.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067JES3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51816: 2179-2707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063090_010 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
2 Hb_002079_010 0.0662502803 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
3 Hb_001789_240 0.0671581823 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
4 Hb_018838_030 0.0712708433 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005993_040 0.0720402497 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
6 Hb_000853_170 0.0732144045 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
7 Hb_006400_030 0.0735519664 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
8 Hb_000720_120 0.073693902 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_118707_030 0.0741019548 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_002391_300 0.07423938 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
11 Hb_002081_130 0.0762212958 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_001571_040 0.0772123476 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
13 Hb_000373_240 0.0772401169 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
14 Hb_004440_090 0.0775631237 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
15 Hb_000483_200 0.0779019844 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_007218_080 0.0780063202 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
17 Hb_001006_140 0.0783809069 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
18 Hb_000032_570 0.0784647938 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
19 Hb_000300_060 0.0791437157 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
20 Hb_002043_190 0.0791580079 - - rwd domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_063090_010 Hb_063090_010 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_018838_030 Hb_018838_030 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_007426_030 Hb_007426_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_000373_240 Hb_000373_240 Hb_001789_240--Hb_000373_240 Hb_009133_010 Hb_009133_010 Hb_001789_240--Hb_009133_010 Hb_006692_030 Hb_006692_030 Hb_001789_240--Hb_006692_030 Hb_002205_040 Hb_002205_040 Hb_001789_240--Hb_002205_040 Hb_002391_300 Hb_002391_300 Hb_001789_240--Hb_002391_300 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_000853_420 Hb_000853_420 Hb_000853_170--Hb_000853_420 Hb_000109_090 Hb_000109_090 Hb_000853_170--Hb_000109_090 Hb_005276_210 Hb_005276_210 Hb_000853_170--Hb_005276_210 Hb_001006_140 Hb_001006_140 Hb_000853_170--Hb_001006_140 Hb_015746_010 Hb_015746_010 Hb_000853_170--Hb_015746_010 Hb_004577_020 Hb_004577_020 Hb_000853_170--Hb_004577_020 Hb_000483_200 Hb_000483_200 Hb_006400_030--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_030--Hb_003032_040 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71692 4.59955 3.91187 3.53171 11.2323 14.111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7804 13.0998 7.99098 8.40621 5.0403

CAGE analysis