Hb_063100_010

Information

Type -
Description -
Location Contig63100: 3358-5864
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15940g
description POPTRDRAFT_246865; TATA box-binding protein-associated factor
nr
ID XP_002320500.1
description TATA box-binding protein-associated factor [Populus trichocarpa]
swissprot
ID Q9MAU3
description Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1
trembl
ID B9IAM7
description TATA box-binding protein-associated factor OS=Populus trichocarpa GN=POPTR_0014s15940g PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription initiation factor tfiid subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063100_010 0.0 - - TATA box-binding protein-associated factor [Populus trichocarpa]
2 Hb_045046_010 0.080173661 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
3 Hb_003878_140 0.084600269 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
4 Hb_000224_060 0.1054207083 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
5 Hb_001584_170 0.1068489159 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_002977_010 0.1069360381 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
7 Hb_000465_310 0.1090358489 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003126_030 0.1093071307 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000336_140 0.1116945005 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001616_050 0.112315307 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_173953_010 0.1147067045 - - hypothetical protein RCOM_1267370 [Ricinus communis]
12 Hb_001141_330 0.1152503082 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
13 Hb_000976_150 0.1202520785 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
14 Hb_001720_010 0.1205244594 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_006573_200 0.1214744249 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
16 Hb_000890_040 0.1221460217 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
17 Hb_023827_040 0.1226402669 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
18 Hb_000140_080 0.1232972162 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_007164_020 0.1241092291 - - hypothetical protein glysoja_025872 [Glycine soja]
20 Hb_000740_070 0.1243556572 - - -

Gene co-expression network

sample Hb_063100_010 Hb_063100_010 Hb_045046_010 Hb_045046_010 Hb_063100_010--Hb_045046_010 Hb_003878_140 Hb_003878_140 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_001584_170 Hb_001584_170 Hb_063100_010--Hb_001584_170 Hb_002977_010 Hb_002977_010 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310 Hb_000336_140 Hb_000336_140 Hb_045046_010--Hb_000336_140 Hb_045046_010--Hb_002977_010 Hb_045046_010--Hb_003878_140 Hb_003126_030 Hb_003126_030 Hb_045046_010--Hb_003126_030 Hb_002849_080 Hb_002849_080 Hb_045046_010--Hb_002849_080 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000224_060--Hb_000865_080 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_001584_170--Hb_000224_060 Hb_012395_160 Hb_012395_160 Hb_001584_170--Hb_012395_160 Hb_001584_170--Hb_002977_010 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_002977_010--Hb_001616_050 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_005333_020 Hb_005333_020 Hb_000465_310--Hb_005333_020 Hb_006588_090 Hb_006588_090 Hb_000465_310--Hb_006588_090 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_000465_310--Hb_003878_140 Hb_000465_310--Hb_002977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9044 9.99644 3.59689 0.732256 10.6655 8.8248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15353 5.9367 6.92343 2.67955 1.23246

CAGE analysis