Hb_063134_010

Information

Type transcription factor
Description TF Family: SET
Location Contig63134: 46-773
Sequence    

Annotation

kegg
ID rcu:RCOM_1216590
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_002528332.1
description histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
swissprot
ID Q9T0G7
description Histone-lysine N-methyltransferase family member SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=1 SV=1
trembl
ID I1MMN2
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=2
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase family member suvh9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063134_010 0.0 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
2 Hb_007193_100 0.0520192084 - - syntaxin family protein [Populus trichocarpa]
3 Hb_029510_140 0.0720129735 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
4 Hb_003005_020 0.0743678182 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
5 Hb_000175_070 0.0776431958 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
6 Hb_000172_370 0.0820596626 - - -
7 Hb_000384_090 0.0828042206 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
8 Hb_000317_430 0.0861717937 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
9 Hb_000103_140 0.088056475 - - ribosomal protein S3a [Populus trichocarpa]
10 Hb_118419_020 0.0888726002 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
11 Hb_003120_060 0.0906694705 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_000023_140 0.0912991416 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
13 Hb_001246_100 0.093346953 - - Ras-related small GTP-binding family protein [Theobroma cacao]
14 Hb_003038_030 0.0937398655 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
15 Hb_001842_070 0.0939893949 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
16 Hb_000386_040 0.0981387973 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_001902_050 0.0986028854 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
18 Hb_001135_160 0.0988138506 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
19 Hb_010436_070 0.100662467 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
20 Hb_000297_050 0.1013578393 - - hypothetical protein JCGZ_08840 [Jatropha curcas]

Gene co-expression network

sample Hb_063134_010 Hb_063134_010 Hb_007193_100 Hb_007193_100 Hb_063134_010--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_063134_010--Hb_029510_140 Hb_003005_020 Hb_003005_020 Hb_063134_010--Hb_003005_020 Hb_000175_070 Hb_000175_070 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_007193_100--Hb_000175_070 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_029510_140--Hb_000175_070 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_003005_020--Hb_000172_370 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_000172_370--Hb_148912_010 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_000384_090--Hb_000608_030 Hb_003120_060 Hb_003120_060 Hb_000384_090--Hb_003120_060 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17513 1.91993 2.23438 4.35944 12.6516 18.8655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0732 12.8229 11.7841 3.19769 3.017

CAGE analysis