Hb_063405_020

Information

Type -
Description -
Location Contig63405: 16607-18742
Sequence    

Annotation

kegg
ID sly:101251555
description uncharacterized LOC101251555
nr
ID XP_011070202.1
description PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID F2E447
description Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063405_020 0.0 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
2 Hb_002360_030 0.2136491188 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
3 Hb_011310_080 0.2197161148 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
4 Hb_002188_140 0.2245620536 - - PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]
5 Hb_000001_130 0.250601273 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_001114_040 0.2508539009 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
7 Hb_007054_050 0.2566886806 - - -
8 Hb_000122_210 0.2571507182 - - -
9 Hb_131872_010 0.2626509436 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_062671_010 0.2635677356 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_005227_040 0.2639319275 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
12 Hb_011663_020 0.2730916145 - - Putative retrotransposon protein, identical [Solanum demissum]
13 Hb_003124_110 0.2745750257 - - hypothetical protein VITISV_026680 [Vitis vinifera]
14 Hb_009150_030 0.2821909158 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
15 Hb_002226_050 0.2849367445 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
16 Hb_011986_010 0.2854780654 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_012760_110 0.2861218075 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
18 Hb_003636_040 0.2861770794 - - mitochondrial translational initiation factor, putative [Ricinus communis]
19 Hb_003944_020 0.2899687613 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
20 Hb_000670_100 0.290318047 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_063405_020 Hb_063405_020 Hb_002360_030 Hb_002360_030 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_001114_040 Hb_001114_040 Hb_063405_020--Hb_001114_040 Hb_007054_050 Hb_007054_050 Hb_063405_020--Hb_007054_050 Hb_140459_010 Hb_140459_010 Hb_002360_030--Hb_140459_010 Hb_005227_040 Hb_005227_040 Hb_002360_030--Hb_005227_040 Hb_003124_110 Hb_003124_110 Hb_002360_030--Hb_003124_110 Hb_002360_030--Hb_007054_050 Hb_003186_040 Hb_003186_040 Hb_002360_030--Hb_003186_040 Hb_003211_030 Hb_003211_030 Hb_002360_030--Hb_003211_030 Hb_009615_120 Hb_009615_120 Hb_011310_080--Hb_009615_120 Hb_000670_100 Hb_000670_100 Hb_011310_080--Hb_000670_100 Hb_011310_080--Hb_000001_130 Hb_000920_130 Hb_000920_130 Hb_011310_080--Hb_000920_130 Hb_002704_070 Hb_002704_070 Hb_011310_080--Hb_002704_070 Hb_000122_210 Hb_000122_210 Hb_011310_080--Hb_000122_210 Hb_015690_010 Hb_015690_010 Hb_002188_140--Hb_015690_010 Hb_000175_020 Hb_000175_020 Hb_002188_140--Hb_000175_020 Hb_062671_010 Hb_062671_010 Hb_002188_140--Hb_062671_010 Hb_000828_050 Hb_000828_050 Hb_002188_140--Hb_000828_050 Hb_000230_030 Hb_000230_030 Hb_002188_140--Hb_000230_030 Hb_000001_130--Hb_005227_040 Hb_000215_360 Hb_000215_360 Hb_000001_130--Hb_000215_360 Hb_012760_110 Hb_012760_110 Hb_000001_130--Hb_012760_110 Hb_000086_630 Hb_000086_630 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_001604_150 Hb_001604_150 Hb_000001_130--Hb_001604_150 Hb_011986_010 Hb_011986_010 Hb_001114_040--Hb_011986_010 Hb_001114_040--Hb_000122_210 Hb_001114_040--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_001114_040--Hb_009150_030 Hb_002450_170 Hb_002450_170 Hb_001114_040--Hb_002450_170 Hb_000460_070 Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.06333 0.0157638 0 0 0.0185452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0482142 0.0379217 0.0699799 0.0761781 0.155593

CAGE analysis