Hb_063480_010

Information

Type -
Description -
Location Contig63480: 69-815
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_444049
description hypothetical protein
nr
ID XP_009335262.1
description PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
swissprot
ID Q7XD96
description Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2
trembl
ID W5ELB9
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0016787
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063480_010 0.0 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
2 Hb_143800_010 0.1685756863 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
3 Hb_151939_010 0.2444366022 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
4 Hb_025048_020 0.2744079307 - - cytochrome P450, putative [Ricinus communis]
5 Hb_094437_010 0.3045460457 - - -
6 Hb_000136_180 0.3089455908 - - ribosomal protein S28, putative [Ricinus communis]
7 Hb_000415_070 0.310791792 - - -
8 Hb_000640_110 0.3251742895 - - -
9 Hb_172572_010 0.3295560372 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
10 Hb_002291_040 0.3320718972 - - hypothetical protein VITISV_030841 [Vitis vinifera]
11 Hb_000029_100 0.3405064392 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
12 Hb_112047_010 0.3411540806 - - -
13 Hb_003078_060 0.3421009508 - - 60S ribosomal protein L32, putative [Ricinus communis]
14 Hb_041025_010 0.3423334383 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
15 Hb_003925_030 0.3437690413 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002391_090 0.3441895415 - - PREDICTED: IST1-like protein [Jatropha curcas]
17 Hb_000136_130 0.3555118501 - - PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
18 Hb_005542_090 0.3574128438 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
19 Hb_154600_010 0.3574786277 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
20 Hb_001623_290 0.3577451302 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_063480_010 Hb_063480_010 Hb_143800_010 Hb_143800_010 Hb_063480_010--Hb_143800_010 Hb_151939_010 Hb_151939_010 Hb_063480_010--Hb_151939_010 Hb_025048_020 Hb_025048_020 Hb_063480_010--Hb_025048_020 Hb_094437_010 Hb_094437_010 Hb_063480_010--Hb_094437_010 Hb_000136_180 Hb_000136_180 Hb_063480_010--Hb_000136_180 Hb_000415_070 Hb_000415_070 Hb_063480_010--Hb_000415_070 Hb_143800_010--Hb_000415_070 Hb_143800_010--Hb_151939_010 Hb_000640_110 Hb_000640_110 Hb_143800_010--Hb_000640_110 Hb_143800_010--Hb_000136_180 Hb_005542_090 Hb_005542_090 Hb_143800_010--Hb_005542_090 Hb_002291_040 Hb_002291_040 Hb_151939_010--Hb_002291_040 Hb_003925_030 Hb_003925_030 Hb_151939_010--Hb_003925_030 Hb_151939_010--Hb_005542_090 Hb_088428_010 Hb_088428_010 Hb_151939_010--Hb_088428_010 Hb_154600_010 Hb_154600_010 Hb_025048_020--Hb_154600_010 Hb_000926_230 Hb_000926_230 Hb_025048_020--Hb_000926_230 Hb_000029_100 Hb_000029_100 Hb_025048_020--Hb_000029_100 Hb_000028_060 Hb_000028_060 Hb_025048_020--Hb_000028_060 Hb_001545_050 Hb_001545_050 Hb_025048_020--Hb_001545_050 Hb_172572_010 Hb_172572_010 Hb_094437_010--Hb_172572_010 Hb_001032_030 Hb_001032_030 Hb_094437_010--Hb_001032_030 Hb_011781_040 Hb_011781_040 Hb_094437_010--Hb_011781_040 Hb_001278_080 Hb_001278_080 Hb_094437_010--Hb_001278_080 Hb_010534_050 Hb_010534_050 Hb_094437_010--Hb_010534_050 Hb_154381_010 Hb_154381_010 Hb_094437_010--Hb_154381_010 Hb_007188_020 Hb_007188_020 Hb_000136_180--Hb_007188_020 Hb_002687_080 Hb_002687_080 Hb_000136_180--Hb_002687_080 Hb_112047_010 Hb_112047_010 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290 Hb_001517_030 Hb_001517_030 Hb_000415_070--Hb_001517_030 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_000415_070--Hb_015026_150 Hb_000415_070--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113082 0 0.181977 0.239483 0 0.418822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.211986 0 0.0944803 0

CAGE analysis