Hb_063480_020

Information

Type -
Description -
Location Contig63480: 1447-1866
Sequence    

Annotation

kegg
ID cic:CICLE_v10018447mg
description hypothetical protein
nr
ID CBI38729.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8LMR2
description Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1
trembl
ID A0A067K9A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14170 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063480_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_054885_020 0.1317122401 - - -
3 Hb_000406_110 0.1343477915 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
4 Hb_000537_140 0.1406089599 - - lupus la ribonucleoprotein, putative [Ricinus communis]
5 Hb_006588_150 0.1442778047 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
6 Hb_002837_110 0.1455640972 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
7 Hb_049160_010 0.1516232346 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_000497_010 0.1553551488 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
9 Hb_011287_050 0.1556587555 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
10 Hb_032808_030 0.1560857724 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_141212_010 0.1565514513 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_003177_060 0.158569588 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
13 Hb_144744_010 0.1589810372 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_012184_060 0.160201227 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
15 Hb_007894_130 0.1664920055 - - hypothetical protein RCOM_0584960 [Ricinus communis]
16 Hb_001034_070 0.1667618442 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_008143_070 0.1695235141 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
18 Hb_000521_270 0.1698614336 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
19 Hb_004228_100 0.1700966143 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_000059_020 0.170338131 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_063480_020 Hb_063480_020 Hb_054885_020 Hb_054885_020 Hb_063480_020--Hb_054885_020 Hb_000406_110 Hb_000406_110 Hb_063480_020--Hb_000406_110 Hb_000537_140 Hb_000537_140 Hb_063480_020--Hb_000537_140 Hb_006588_150 Hb_006588_150 Hb_063480_020--Hb_006588_150 Hb_002837_110 Hb_002837_110 Hb_063480_020--Hb_002837_110 Hb_049160_010 Hb_049160_010 Hb_063480_020--Hb_049160_010 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_054885_020--Hb_000537_140 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_144744_010 Hb_144744_010 Hb_000406_110--Hb_144744_010 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000059_020 Hb_000059_020 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_077048_010 Hb_077048_010 Hb_000537_140--Hb_077048_010 Hb_004096_070 Hb_004096_070 Hb_000537_140--Hb_004096_070 Hb_000453_150 Hb_000453_150 Hb_000537_140--Hb_000453_150 Hb_002874_090 Hb_002874_090 Hb_000537_140--Hb_002874_090 Hb_061878_010 Hb_061878_010 Hb_000537_140--Hb_061878_010 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_003211_010 Hb_003211_010 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090 Hb_003106_030 Hb_003106_030 Hb_002837_110--Hb_003106_030 Hb_000780_170 Hb_000780_170 Hb_002837_110--Hb_000780_170 Hb_005104_010 Hb_005104_010 Hb_002837_110--Hb_005104_010 Hb_007894_130 Hb_007894_130 Hb_002837_110--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_002837_110--Hb_004371_010 Hb_001054_030 Hb_001054_030 Hb_002837_110--Hb_001054_030 Hb_157846_010 Hb_157846_010 Hb_049160_010--Hb_157846_010 Hb_000497_010 Hb_000497_010 Hb_049160_010--Hb_000497_010 Hb_141918_010 Hb_141918_010 Hb_049160_010--Hb_141918_010 Hb_001907_100 Hb_001907_100 Hb_049160_010--Hb_001907_100 Hb_010727_010 Hb_010727_010 Hb_049160_010--Hb_010727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10587 7.40712 1.46906 2.9895 1.40888 7.11466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81776 1.42776 1.15927 4.42728 1.52961

CAGE analysis