Hb_063716_010

Information

Type -
Description -
Location Contig63716: 11514-19755
Sequence    

Annotation

kegg
ID rcu:RCOM_0899520
description phopholipase d alpha, putative (EC:3.1.4.4)
nr
ID XP_002517625.1
description phopholipase d alpha, putative [Ricinus communis]
swissprot
ID Q41142
description Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1
trembl
ID B9RV56
description Phospholipase D OS=Ricinus communis GN=RCOM_0899520 PE=3 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d alpha 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51978: 11587-19598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_010 0.0 - - phopholipase d alpha, putative [Ricinus communis]
2 Hb_011282_030 0.100563806 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
3 Hb_000012_150 0.1114722695 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
4 Hb_079326_010 0.1187850141 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
5 Hb_011644_020 0.1244078805 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
6 Hb_001846_060 0.1284531675 - - hypothetical protein RCOM_0992860 [Ricinus communis]
7 Hb_000497_230 0.1400676823 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
8 Hb_001584_110 0.1425654618 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
9 Hb_000165_130 0.1452586195 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
10 Hb_023327_030 0.1453184649 - - osmotin-like protein [Hevea brasiliensis]
11 Hb_000134_360 0.1456229285 - - PREDICTED: protein gar2 [Jatropha curcas]
12 Hb_004881_050 0.1473754481 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
13 Hb_007786_010 0.1474485972 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
14 Hb_002493_090 0.148256488 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
15 Hb_000926_120 0.1485245169 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
16 Hb_000056_120 0.1498360761 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_009421_100 0.1500029231 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
18 Hb_000573_040 0.1501207107 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
19 Hb_000684_180 0.1505884767 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
20 Hb_000849_100 0.1506526537 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]

Gene co-expression network

sample Hb_063716_010 Hb_063716_010 Hb_011282_030 Hb_011282_030 Hb_063716_010--Hb_011282_030 Hb_000012_150 Hb_000012_150 Hb_063716_010--Hb_000012_150 Hb_079326_010 Hb_079326_010 Hb_063716_010--Hb_079326_010 Hb_011644_020 Hb_011644_020 Hb_063716_010--Hb_011644_020 Hb_001846_060 Hb_001846_060 Hb_063716_010--Hb_001846_060 Hb_000497_230 Hb_000497_230 Hb_063716_010--Hb_000497_230 Hb_001584_110 Hb_001584_110 Hb_011282_030--Hb_001584_110 Hb_000230_330 Hb_000230_330 Hb_011282_030--Hb_000230_330 Hb_014568_030 Hb_014568_030 Hb_011282_030--Hb_014568_030 Hb_022256_040 Hb_022256_040 Hb_011282_030--Hb_022256_040 Hb_000462_150 Hb_000462_150 Hb_011282_030--Hb_000462_150 Hb_010222_030 Hb_010222_030 Hb_011282_030--Hb_010222_030 Hb_001439_180 Hb_001439_180 Hb_000012_150--Hb_001439_180 Hb_002025_140 Hb_002025_140 Hb_000012_150--Hb_002025_140 Hb_042083_070 Hb_042083_070 Hb_000012_150--Hb_042083_070 Hb_000573_040 Hb_000573_040 Hb_000012_150--Hb_000573_040 Hb_005725_070 Hb_005725_070 Hb_000012_150--Hb_005725_070 Hb_004881_050 Hb_004881_050 Hb_079326_010--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_000742_250 Hb_000742_250 Hb_001846_060--Hb_000742_250 Hb_002400_270 Hb_002400_270 Hb_001846_060--Hb_002400_270 Hb_000369_060 Hb_000369_060 Hb_001846_060--Hb_000369_060 Hb_001846_060--Hb_011644_020 Hb_007786_010 Hb_007786_010 Hb_001846_060--Hb_007786_010 Hb_011316_110 Hb_011316_110 Hb_001846_060--Hb_011316_110 Hb_018954_020 Hb_018954_020 Hb_000497_230--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_000497_230--Hb_000197_210 Hb_008406_140 Hb_008406_140 Hb_000497_230--Hb_008406_140 Hb_001279_330 Hb_001279_330 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_002159_040 Hb_002159_040 Hb_000497_230--Hb_002159_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
351.746 41.2602 27.8579 132.697 366.508 363.895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.357 32.5343 178.432 73.5981 31.3625

CAGE analysis