Hb_063716_050

Information

Type -
Description -
Location Contig63716: 54368-58491
Sequence    

Annotation

kegg
ID rcu:RCOM_0899500
description hypothetical protein
nr
ID XP_012073197.1
description PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
swissprot
ID Q5NA06
description Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1
trembl
ID A0A067KZ20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06150 PE=4 SV=1
Gene Ontology
ID GO:0016020
description coatomer subunit zeta-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51980: 54362-58418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_050 0.0 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
2 Hb_000103_560 0.0469154982 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_001489_060 0.0475012586 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
4 Hb_003050_080 0.0501520629 - - 40S ribosomal protein S14, putative [Ricinus communis]
5 Hb_000529_190 0.0568434373 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
6 Hb_000832_140 0.0573315293 - - actin depolymerizing factor 4 [Hevea brasiliensis]
7 Hb_001604_080 0.057476484 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
8 Hb_000056_200 0.059701196 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
9 Hb_002006_020 0.0609408378 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
10 Hb_004440_090 0.0614312628 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
11 Hb_002214_040 0.0617021956 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000926_250 0.0625169373 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_000243_030 0.0632231667 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
14 Hb_148912_010 0.0634459743 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001821_010 0.0651075436 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
16 Hb_011689_080 0.0664538467 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
17 Hb_007576_040 0.068641719 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
18 Hb_118707_030 0.0689059383 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
19 Hb_006541_030 0.0690825606 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
20 Hb_002874_190 0.0693755585 - - proteasome subunit beta type 6,9, putative [Ricinus communis]

Gene co-expression network

sample Hb_063716_050 Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_000103_560--Hb_000832_140 Hb_000103_560--Hb_001604_080 Hb_000815_040 Hb_000815_040 Hb_000103_560--Hb_000815_040 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000103_560--Hb_000529_190 Hb_001489_060--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_003050_080--Hb_000832_140 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_003050_080--Hb_000056_200 Hb_002214_040 Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_000529_190--Hb_001604_080 Hb_000529_190--Hb_000832_140 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_000832_140--Hb_002214_040 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_001604_080--Hb_000815_040 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.011 42.218 67.0076 70.693 139.707 146.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.445 199.44 126.592 58.7318 46.3701

CAGE analysis