Hb_063805_010

Information

Type -
Description -
Location Contig63805: 640-1346
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063805_010 0.0 - - -
2 Hb_027472_210 0.0949476988 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
3 Hb_092337_020 0.108513149 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
4 Hb_001300_100 0.1253353692 - - -
5 Hb_000563_330 0.1284788282 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_002947_040 0.1384557682 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
7 Hb_042509_030 0.1411500496 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
8 Hb_001269_200 0.1443786244 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
9 Hb_058551_010 0.1446463375 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_185516_010 0.14532134 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_007083_010 0.1474079267 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
12 Hb_006452_160 0.148490801 - - structural constituent of ribosome, putative [Ricinus communis]
13 Hb_027073_030 0.1487125189 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_005291_040 0.1520392049 - - PREDICTED: gamma-gliadin [Jatropha curcas]
15 Hb_002739_130 0.1526138659 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
16 Hb_000140_330 0.1530761014 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
17 Hb_000836_430 0.1535075906 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
18 Hb_002890_150 0.154117277 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
19 Hb_000045_320 0.1542718731 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_039605_010 0.1547785021 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_063805_010 Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_063805_010--Hb_027472_210 Hb_092337_020 Hb_092337_020 Hb_063805_010--Hb_092337_020 Hb_001300_100 Hb_001300_100 Hb_063805_010--Hb_001300_100 Hb_000563_330 Hb_000563_330 Hb_063805_010--Hb_000563_330 Hb_002947_040 Hb_002947_040 Hb_063805_010--Hb_002947_040 Hb_042509_030 Hb_042509_030 Hb_063805_010--Hb_042509_030 Hb_027472_210--Hb_092337_020 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_000169_190 Hb_000169_190 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_092337_020--Hb_000563_330 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_000175_090 Hb_000175_090 Hb_092337_020--Hb_000175_090 Hb_007123_070 Hb_007123_070 Hb_092337_020--Hb_007123_070 Hb_058551_010 Hb_058551_010 Hb_001300_100--Hb_058551_010 Hb_001300_100--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_001300_100--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_001300_100--Hb_013405_150 Hb_001300_100--Hb_002947_040 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_002157_260 Hb_002157_260 Hb_002947_040--Hb_002157_260 Hb_001040_040 Hb_001040_040 Hb_002947_040--Hb_001040_040 Hb_007951_100 Hb_007951_100 Hb_002947_040--Hb_007951_100 Hb_002947_040--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_002947_040--Hb_005188_060 Hb_009252_100 Hb_009252_100 Hb_002947_040--Hb_009252_100 Hb_000139_190 Hb_000139_190 Hb_042509_030--Hb_000139_190 Hb_009393_220 Hb_009393_220 Hb_042509_030--Hb_009393_220 Hb_000227_250 Hb_000227_250 Hb_042509_030--Hb_000227_250 Hb_042509_030--Hb_092337_020 Hb_000407_040 Hb_000407_040 Hb_042509_030--Hb_000407_040 Hb_000042_340 Hb_000042_340 Hb_042509_030--Hb_000042_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.281 140.982 217.262 15.6896 127.541 90.0082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6374 63.1976 46.147 33.6604 24.5104

CAGE analysis