Hb_063885_010

Information

Type -
Description -
Location Contig63885: 848-1786
Sequence    

Annotation

kegg
ID rcu:RCOM_1682240
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002509661.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID O64495
description Subtilisin-like protease SBT1.2 OS=Arabidopsis thaliana GN=SBT1.2 PE=2 SV=1
trembl
ID B9RBX7
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1682240 PE=4 SV=1
Gene Ontology
ID GO:0004252
description xylem serine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063885_010 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_003947_020 0.0871966836 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
3 Hb_026188_010 0.0940447114 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
4 Hb_034168_060 0.0944763631 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
5 Hb_009095_020 0.0946457925 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_000336_130 0.0965600699 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
7 Hb_000696_200 0.0969825544 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
8 Hb_003228_060 0.0984023677 - - conserved hypothetical protein [Ricinus communis]
9 Hb_083242_040 0.100346347 - - -
10 Hb_006331_010 0.1008627315 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_003732_030 0.1011830799 - - gibberellin 20-oxidase, putative [Ricinus communis]
12 Hb_001715_050 0.1021249369 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
13 Hb_159308_010 0.1024878571 - - ribosomal protein S4 [Cercidiphyllum japonicum]
14 Hb_002010_010 0.1025247113 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_151890_020 0.1027929556 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
16 Hb_007595_030 0.1047090959 - - psbA gene product (chloroplast) [Silene noctiflora]
17 Hb_048694_010 0.1063394483 - - catalytic, putative [Ricinus communis]
18 Hb_000645_270 0.1068212781 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
19 Hb_000832_050 0.1088487992 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
20 Hb_002997_060 0.1093176957 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]

Gene co-expression network

sample Hb_063885_010 Hb_063885_010 Hb_003947_020 Hb_003947_020 Hb_063885_010--Hb_003947_020 Hb_026188_010 Hb_026188_010 Hb_063885_010--Hb_026188_010 Hb_034168_060 Hb_034168_060 Hb_063885_010--Hb_034168_060 Hb_009095_020 Hb_009095_020 Hb_063885_010--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_063885_010--Hb_000336_130 Hb_000696_200 Hb_000696_200 Hb_063885_010--Hb_000696_200 Hb_183479_030 Hb_183479_030 Hb_003947_020--Hb_183479_030 Hb_000645_270 Hb_000645_270 Hb_003947_020--Hb_000645_270 Hb_002997_060 Hb_002997_060 Hb_003947_020--Hb_002997_060 Hb_003947_020--Hb_000696_200 Hb_005171_020 Hb_005171_020 Hb_003947_020--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_003947_020--Hb_043327_010 Hb_026188_010--Hb_009095_020 Hb_026188_010--Hb_000336_130 Hb_026188_010--Hb_000645_270 Hb_026188_010--Hb_034168_060 Hb_001999_330 Hb_001999_330 Hb_026188_010--Hb_001999_330 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_083242_040 Hb_083242_040 Hb_034168_060--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_034168_060--Hb_001715_050 Hb_007645_040 Hb_007645_040 Hb_034168_060--Hb_007645_040 Hb_006331_010 Hb_006331_010 Hb_034168_060--Hb_006331_010 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_009095_020--Hb_001081_070 Hb_009095_020--Hb_083242_040 Hb_009095_020--Hb_001715_050 Hb_000336_130--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_000336_130--Hb_002010_010 Hb_171685_070 Hb_171685_070 Hb_000336_130--Hb_171685_070 Hb_007101_090 Hb_007101_090 Hb_000336_130--Hb_007101_090 Hb_000696_200--Hb_003228_060 Hb_000696_200--Hb_083242_040 Hb_000696_200--Hb_001715_050 Hb_000696_200--Hb_002997_060 Hb_006272_010 Hb_006272_010 Hb_000696_200--Hb_006272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.18412 1.66762 2.06062 0 0.129151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.237133 0.173727 33.5469

CAGE analysis