Hb_064194_010

Information

Type -
Description -
Location Contig64194: 19-896
Sequence    

Annotation

kegg
ID rcu:RCOM_1691860
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012086729.1
description PREDICTED: endoglucanase 6 [Jatropha curcas]
swissprot
ID Q8L7I0
description Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11050 PE=2 SV=1
trembl
ID B9RCS0
description Endo-1,4-beta-glucanase, putative OS=Ricinus communis GN=RCOM_1691860 PE=4 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064194_010 0.0 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
2 Hb_001152_040 0.0755614202 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
3 Hb_000009_100 0.0845456968 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
4 Hb_132880_020 0.0964608065 - - hypothetical protein VITISV_026364 [Vitis vinifera]
5 Hb_000700_020 0.1070936812 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
6 Hb_177179_020 0.1162567769 - - conserved hypothetical protein [Ricinus communis]
7 Hb_109304_010 0.1222448253 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
8 Hb_013394_110 0.1329254687 - - zinc finger protein, putative [Ricinus communis]
9 Hb_179367_020 0.1341352073 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_000483_120 0.1396622606 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
11 Hb_120289_010 0.1407196493 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
12 Hb_001976_070 0.1408047666 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
13 Hb_013405_170 0.1432121119 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
14 Hb_005743_040 0.1432131599 - - JHL22C18.10 [Jatropha curcas]
15 Hb_000123_080 0.1432146801 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
16 Hb_000378_020 0.1432252045 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
17 Hb_004117_220 0.1432286783 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
18 Hb_021281_010 0.1433059017 - - Major latex protein, putative [Ricinus communis]
19 Hb_001882_120 0.1433469025 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_008887_060 0.1434394588 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_064194_010 Hb_064194_010 Hb_001152_040 Hb_001152_040 Hb_064194_010--Hb_001152_040 Hb_000009_100 Hb_000009_100 Hb_064194_010--Hb_000009_100 Hb_132880_020 Hb_132880_020 Hb_064194_010--Hb_132880_020 Hb_000700_020 Hb_000700_020 Hb_064194_010--Hb_000700_020 Hb_177179_020 Hb_177179_020 Hb_064194_010--Hb_177179_020 Hb_109304_010 Hb_109304_010 Hb_064194_010--Hb_109304_010 Hb_001152_040--Hb_000009_100 Hb_001152_040--Hb_132880_020 Hb_001152_040--Hb_177179_020 Hb_179367_020 Hb_179367_020 Hb_001152_040--Hb_179367_020 Hb_001976_070 Hb_001976_070 Hb_001152_040--Hb_001976_070 Hb_000009_100--Hb_132880_020 Hb_013394_110 Hb_013394_110 Hb_000009_100--Hb_013394_110 Hb_000009_100--Hb_001976_070 Hb_001488_120 Hb_001488_120 Hb_000009_100--Hb_001488_120 Hb_132880_020--Hb_001976_070 Hb_132880_020--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_132880_020--Hb_000908_030 Hb_157881_010 Hb_157881_010 Hb_132880_020--Hb_157881_010 Hb_120289_010 Hb_120289_010 Hb_000700_020--Hb_120289_010 Hb_000056_290 Hb_000056_290 Hb_000700_020--Hb_000056_290 Hb_000700_020--Hb_109304_010 Hb_000162_160 Hb_000162_160 Hb_000700_020--Hb_000162_160 Hb_128392_010 Hb_128392_010 Hb_000700_020--Hb_128392_010 Hb_000483_120 Hb_000483_120 Hb_177179_020--Hb_000483_120 Hb_057721_010 Hb_057721_010 Hb_177179_020--Hb_057721_010 Hb_177179_020--Hb_179367_020 Hb_119583_030 Hb_119583_030 Hb_177179_020--Hb_119583_030 Hb_177179_020--Hb_000908_030 Hb_000025_800 Hb_000025_800 Hb_177179_020--Hb_000025_800 Hb_009225_030 Hb_009225_030 Hb_109304_010--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_109304_010--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_109304_010--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_109304_010--Hb_121058_010 Hb_000140_010 Hb_000140_010 Hb_109304_010--Hb_000140_010 Hb_001456_010 Hb_001456_010 Hb_109304_010--Hb_001456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.624513 8.42092 10.8386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0 0 0 0

CAGE analysis