Hb_064201_010

Information

Type -
Description -
Location Contig64201: 236-1038
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID XP_002509752.1
description hypothetical protein RCOM_1685970 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RC68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1685970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064201_010 0.0 - - hypothetical protein RCOM_1685970 [Ricinus communis]
2 Hb_001146_070 0.1163471895 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
3 Hb_005271_030 0.1173165527 - - copper-transporting atpase p-type, putative [Ricinus communis]
4 Hb_000329_620 0.1274898423 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
5 Hb_003376_170 0.1336049829 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
6 Hb_000352_130 0.1348390577 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
7 Hb_000061_410 0.1374192411 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_029464_010 0.1392010806 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
9 Hb_001628_110 0.1402866031 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
10 Hb_001846_080 0.1419158331 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
11 Hb_001635_220 0.1491052312 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
12 Hb_001252_160 0.1510346763 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
13 Hb_002081_100 0.1521024666 - - -
14 Hb_007158_030 0.1573919818 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_003913_100 0.1575758365 - - copper amine oxidase, putative [Ricinus communis]
16 Hb_002835_190 0.1584690396 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_000210_130 0.1585414649 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
18 Hb_009193_130 0.1593820908 - - hypothetical protein RCOM_1620550 [Ricinus communis]
19 Hb_050964_020 0.1626984501 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
20 Hb_003507_020 0.1627944308 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]

Gene co-expression network

sample Hb_064201_010 Hb_064201_010 Hb_001146_070 Hb_001146_070 Hb_064201_010--Hb_001146_070 Hb_005271_030 Hb_005271_030 Hb_064201_010--Hb_005271_030 Hb_000329_620 Hb_000329_620 Hb_064201_010--Hb_000329_620 Hb_003376_170 Hb_003376_170 Hb_064201_010--Hb_003376_170 Hb_000352_130 Hb_000352_130 Hb_064201_010--Hb_000352_130 Hb_000061_410 Hb_000061_410 Hb_064201_010--Hb_000061_410 Hb_001146_070--Hb_005271_030 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100 Hb_005271_030--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_005271_030--Hb_009193_130 Hb_005271_030--Hb_007158_030 Hb_002506_110 Hb_002506_110 Hb_005271_030--Hb_002506_110 Hb_005271_030--Hb_001017_100 Hb_000329_620--Hb_007158_030 Hb_000329_620--Hb_029464_010 Hb_000329_620--Hb_009193_130 Hb_002835_190 Hb_002835_190 Hb_000329_620--Hb_002835_190 Hb_000329_620--Hb_005271_030 Hb_001252_160 Hb_001252_160 Hb_000329_620--Hb_001252_160 Hb_011525_020 Hb_011525_020 Hb_003376_170--Hb_011525_020 Hb_005217_020 Hb_005217_020 Hb_003376_170--Hb_005217_020 Hb_005016_150 Hb_005016_150 Hb_003376_170--Hb_005016_150 Hb_003376_170--Hb_000352_130 Hb_000454_030 Hb_000454_030 Hb_003376_170--Hb_000454_030 Hb_004206_040 Hb_004206_040 Hb_000352_130--Hb_004206_040 Hb_000352_130--Hb_001146_070 Hb_000185_090 Hb_000185_090 Hb_000352_130--Hb_000185_090 Hb_000352_130--Hb_005271_030 Hb_000213_060 Hb_000213_060 Hb_000352_130--Hb_000213_060 Hb_000061_410--Hb_001252_160 Hb_000155_070 Hb_000155_070 Hb_000061_410--Hb_000155_070 Hb_003627_020 Hb_003627_020 Hb_000061_410--Hb_003627_020 Hb_003507_020 Hb_003507_020 Hb_000061_410--Hb_003507_020 Hb_000061_410--Hb_029464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43994 0.601208 0.029802 0.217233 15.5092 14.3823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88343 3.5694 1.31554 0.274528 0.132504

CAGE analysis