Hb_064396_010

Information

Type -
Description -
Location Contig64396: 35343-36239
Sequence    

Annotation

kegg
ID rcu:RCOM_0741280
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002525499.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9SHN0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0741280 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probably inactive leucine-rich repeat receptor-like protein kinase at2g25790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064396_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_162378_020 0.056471392 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
3 Hb_002686_070 0.0572595813 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000227_020 0.057701167 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
5 Hb_001220_020 0.0704625468 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_000032_080 0.0761469801 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
7 Hb_011063_030 0.0820805562 - - protein with unknown function [Ricinus communis]
8 Hb_011849_010 0.0833385113 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
9 Hb_000614_200 0.0846543345 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
10 Hb_001235_040 0.0858496074 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
11 Hb_004032_390 0.0859970703 - - CDK, putative [Ricinus communis]
12 Hb_119044_040 0.0887892739 - - cyclin B, putative [Ricinus communis]
13 Hb_003398_050 0.0901339888 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
14 Hb_002374_090 0.0940320016 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
15 Hb_003018_210 0.0951655611 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
16 Hb_027905_040 0.095883756 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
17 Hb_000316_070 0.0962879556 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
18 Hb_000035_190 0.0997591899 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003776_050 0.1003310439 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
20 Hb_004174_030 0.1004940311 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]

Gene co-expression network

sample Hb_064396_010 Hb_064396_010 Hb_162378_020 Hb_162378_020 Hb_064396_010--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_064396_010--Hb_002686_070 Hb_000227_020 Hb_000227_020 Hb_064396_010--Hb_000227_020 Hb_001220_020 Hb_001220_020 Hb_064396_010--Hb_001220_020 Hb_000032_080 Hb_000032_080 Hb_064396_010--Hb_000032_080 Hb_011063_030 Hb_011063_030 Hb_064396_010--Hb_011063_030 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_002686_070 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_002686_070--Hb_000032_080 Hb_000227_020--Hb_162378_020 Hb_000227_020--Hb_002686_070 Hb_000227_020--Hb_011063_030 Hb_001235_040 Hb_001235_040 Hb_000227_020--Hb_001235_040 Hb_000227_020--Hb_000032_080 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001220_020--Hb_001235_040 Hb_000032_080--Hb_011063_030 Hb_000032_080--Hb_001220_020 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.50885 17.0027 4.68483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36439 0.463693

CAGE analysis