Hb_064445_020

Information

Type -
Description -
Location Contig64445: 11499-14568
Sequence    

Annotation

kegg
ID cit:102630967
description serine carboxypeptidase-like 34-like
nr
ID XP_011022036.1
description PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
swissprot
ID Q0WPR4
description Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2
trembl
ID V4SSM4
description Carboxypeptidase OS=Citrus clementina GN=CICLE_v10031313mg PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064445_020 0.0 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
2 Hb_001593_040 0.0138399157 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_002326_010 0.0259309604 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
4 Hb_154038_010 0.0273860507 - - cytochrome P450, putative [Ricinus communis]
5 Hb_008453_050 0.0279699739 - - PREDICTED: peroxidase 64 [Jatropha curcas]
6 Hb_006483_040 0.0309244341 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
7 Hb_000224_190 0.0486749441 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000077_040 0.0500465336 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
9 Hb_001472_150 0.0501400734 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
10 Hb_072771_010 0.051638995 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
11 Hb_001345_050 0.0528512803 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
12 Hb_000115_030 0.0551247089 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
13 Hb_104014_020 0.0559957744 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
14 Hb_003025_170 0.0572167589 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_001232_070 0.0649399861 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002391_340 0.0656797945 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
17 Hb_005839_040 0.0664966767 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
18 Hb_096907_010 0.0674721331 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_001863_470 0.0676557634 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
20 Hb_001437_170 0.067724436 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]

Gene co-expression network

sample Hb_064445_020 Hb_064445_020 Hb_001593_040 Hb_001593_040 Hb_064445_020--Hb_001593_040 Hb_002326_010 Hb_002326_010 Hb_064445_020--Hb_002326_010 Hb_154038_010 Hb_154038_010 Hb_064445_020--Hb_154038_010 Hb_008453_050 Hb_008453_050 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_001593_040--Hb_002326_010 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_008453_050 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_008453_050 Hb_154038_010--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_154038_010--Hb_001345_050 Hb_008453_050--Hb_006483_040 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_001232_070 Hb_001232_070 Hb_006483_040--Hb_001232_070 Hb_001472_150 Hb_001472_150 Hb_006483_040--Hb_001472_150 Hb_002391_340 Hb_002391_340 Hb_006483_040--Hb_002391_340 Hb_001926_080 Hb_001926_080 Hb_000224_190--Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_000224_190--Hb_002391_010 Hb_000224_190--Hb_072771_010 Hb_000224_190--Hb_001345_050 Hb_000224_190--Hb_008453_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.04264 2.26235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.50698

CAGE analysis