Hb_064445_040

Information

Type -
Description -
Location Contig64445: 51829-52316
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09430g
description hypothetical protein
nr
ID XP_006382956.1
description hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
swissprot
ID Q9LXY6
description Putative serine carboxypeptidase-like 53 OS=Arabidopsis thaliana GN=SCPL53 PE=5 SV=1
trembl
ID U5GB42
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s09430g PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064445_040 0.0 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
2 Hb_000392_500 0.0373036448 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000007_190 0.0458187782 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
4 Hb_006634_120 0.047351104 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
5 Hb_010288_010 0.0512309039 - - Beta-glucosidase, putative [Ricinus communis]
6 Hb_135737_010 0.0686301493 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
7 Hb_103225_040 0.0759382761 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
8 Hb_033149_010 0.0790195621 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_152868_020 0.0834114207 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
10 Hb_050514_030 0.0894916787 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
11 Hb_000111_060 0.0906522777 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
12 Hb_000037_150 0.0914329943 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
13 Hb_001477_050 0.0944569135 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_000805_050 0.0953075493 - - zinc transporter, putative [Ricinus communis]
15 Hb_019953_010 0.0957136296 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
16 Hb_003793_010 0.097046551 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
17 Hb_004846_110 0.0971649149 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
18 Hb_010488_050 0.0991005348 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
19 Hb_024074_030 0.1005773236 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
20 Hb_000445_410 0.1018465233 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]

Gene co-expression network

sample Hb_064445_040 Hb_064445_040 Hb_000392_500 Hb_000392_500 Hb_064445_040--Hb_000392_500 Hb_000007_190 Hb_000007_190 Hb_064445_040--Hb_000007_190 Hb_006634_120 Hb_006634_120 Hb_064445_040--Hb_006634_120 Hb_010288_010 Hb_010288_010 Hb_064445_040--Hb_010288_010 Hb_135737_010 Hb_135737_010 Hb_064445_040--Hb_135737_010 Hb_103225_040 Hb_103225_040 Hb_064445_040--Hb_103225_040 Hb_000392_500--Hb_000007_190 Hb_000392_500--Hb_010288_010 Hb_000392_500--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000392_500--Hb_152868_020 Hb_000392_500--Hb_135737_010 Hb_000007_190--Hb_103225_040 Hb_000007_190--Hb_152868_020 Hb_000007_190--Hb_010288_010 Hb_003793_010 Hb_003793_010 Hb_000007_190--Hb_003793_010 Hb_024074_030 Hb_024074_030 Hb_006634_120--Hb_024074_030 Hb_006634_120--Hb_010288_010 Hb_006634_120--Hb_000007_190 Hb_019953_010 Hb_019953_010 Hb_006634_120--Hb_019953_010 Hb_006634_120--Hb_000392_500 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_064396_020 Hb_064396_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000111_060 Hb_000111_060 Hb_135737_010--Hb_000111_060 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_103225_040--Hb_000445_410 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.885352 19.341 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 11.0038

CAGE analysis