Hb_064546_010

Information

Type -
Description -
Location Contig64546: 13177-14561
Sequence    

Annotation

kegg
ID rcu:RCOM_1552200
description Peroxidase 3 precursor, putative (EC:1.11.1.7)
nr
ID XP_012086366.1
description PREDICTED: peroxidase 3 [Jatropha curcas]
swissprot
ID O23044
description Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1
trembl
ID A0A067K0S6
description Peroxidase OS=Jatropha curcas GN=JCGZ_22885 PE=3 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52326: 13214-14573
cDNA
(Sanger)
(ID:Location)		 006_H03.ab1: 13258-14220 , 019_B08.ab1: 13258-14208 , 041_D12.ab1: 13214-14089

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064546_010 0.0 - - PREDICTED: peroxidase 3 [Jatropha curcas]
2 Hb_000984_130 0.0982641444 - - tubulin [Ornithogalum longebracteatum]
3 Hb_000735_020 0.1086609416 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_001357_050 0.1118143466 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
5 Hb_116647_010 0.1160727361 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003606_050 0.1174006877 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
7 Hb_033312_070 0.1178105861 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
8 Hb_012518_080 0.1220645704 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
9 Hb_001085_190 0.124069967 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
10 Hb_011918_070 0.1244362367 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_006788_110 0.1252686275 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
12 Hb_002073_170 0.1261641673 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
13 Hb_006002_050 0.1275043861 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
14 Hb_000297_140 0.1289498557 - - hypothetical protein RCOM_0293450 [Ricinus communis]
15 Hb_000011_280 0.1293177732 - - pectinesterase family protein [Populus trichocarpa]
16 Hb_000997_080 0.1299411412 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
17 Hb_000820_110 0.1338658895 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
18 Hb_084147_010 0.1366757205 - - amino acid transporter, putative [Ricinus communis]
19 Hb_003050_020 0.1367369007 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
20 Hb_004696_010 0.1371986662 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]

Gene co-expression network

sample Hb_064546_010 Hb_064546_010 Hb_000984_130 Hb_000984_130 Hb_064546_010--Hb_000984_130 Hb_000735_020 Hb_000735_020 Hb_064546_010--Hb_000735_020 Hb_001357_050 Hb_001357_050 Hb_064546_010--Hb_001357_050 Hb_116647_010 Hb_116647_010 Hb_064546_010--Hb_116647_010 Hb_003606_050 Hb_003606_050 Hb_064546_010--Hb_003606_050 Hb_033312_070 Hb_033312_070 Hb_064546_010--Hb_033312_070 Hb_000997_080 Hb_000997_080 Hb_000984_130--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000984_130--Hb_000011_280 Hb_000984_130--Hb_000735_020 Hb_006788_110 Hb_006788_110 Hb_000984_130--Hb_006788_110 Hb_002701_030 Hb_002701_030 Hb_000984_130--Hb_002701_030 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_011918_070 Hb_011918_070 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_000735_020--Hb_006788_110 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_002027_430 Hb_002027_430 Hb_116647_010--Hb_002027_430 Hb_001863_010 Hb_001863_010 Hb_116647_010--Hb_001863_010 Hb_116647_010--Hb_000735_020 Hb_116647_010--Hb_001085_190 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_033312_070--Hb_006788_110 Hb_033312_070--Hb_011918_070 Hb_015934_080 Hb_015934_080 Hb_033312_070--Hb_015934_080 Hb_033312_070--Hb_012518_080 Hb_033312_070--Hb_001085_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11273 8.85426 51.0293 108.942 1.54942 1.50923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83527 1.44498 0.994077 14.8072 43.8488

CAGE analysis