Hb_064855_010

Information

Type -
Description -
Location Contig64855: 2-1296
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52457: 273-1197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064855_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000844_020 0.0561895208 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
3 Hb_066262_020 0.060296678 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
4 Hb_000796_100 0.0673950539 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_001271_040 0.0702164322 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
6 Hb_023827_010 0.0709352374 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
7 Hb_001403_100 0.0722830539 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
8 Hb_001104_260 0.0722924679 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
9 Hb_004829_050 0.0725598038 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
10 Hb_011639_130 0.0726970038 - - mads box protein, putative [Ricinus communis]
11 Hb_005204_030 0.0732264069 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
12 Hb_008078_040 0.0740144576 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
13 Hb_000756_040 0.0743205532 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_000764_060 0.0753723416 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
15 Hb_007676_070 0.0758003866 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
16 Hb_068447_010 0.0769935318 - - protein with unknown function [Ricinus communis]
17 Hb_002067_110 0.0783619663 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
18 Hb_011924_010 0.0822208674 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
19 Hb_006616_050 0.0837249685 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
20 Hb_030593_010 0.0847524217 - - hypothetical protein JCGZ_06063 [Jatropha curcas]

Gene co-expression network

sample Hb_064855_010 Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_064855_010--Hb_000844_020 Hb_066262_020 Hb_066262_020 Hb_064855_010--Hb_066262_020 Hb_000796_100 Hb_000796_100 Hb_064855_010--Hb_000796_100 Hb_001271_040 Hb_001271_040 Hb_064855_010--Hb_001271_040 Hb_023827_010 Hb_023827_010 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_002067_110 Hb_002067_110 Hb_000844_020--Hb_002067_110 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_000844_020--Hb_000796_100 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_066262_020--Hb_002067_110 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_006452_140 Hb_006452_140 Hb_000796_100--Hb_006452_140 Hb_011924_030 Hb_011924_030 Hb_000796_100--Hb_011924_030 Hb_000796_100--Hb_006616_050 Hb_000796_100--Hb_023827_010 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_001271_040--Hb_068447_010 Hb_030593_010 Hb_030593_010 Hb_023827_010--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_023827_010--Hb_001766_090 Hb_009740_010 Hb_009740_010 Hb_023827_010--Hb_009740_010 Hb_007658_030 Hb_007658_030 Hb_023827_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_023827_010--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_023827_010--Hb_011909_130 Hb_001104_260 Hb_001104_260 Hb_001403_100--Hb_001104_260 Hb_004829_050 Hb_004829_050 Hb_001403_100--Hb_004829_050 Hb_011639_130 Hb_011639_130 Hb_001403_100--Hb_011639_130 Hb_005204_030 Hb_005204_030 Hb_001403_100--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_001403_100--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_001403_100--Hb_000756_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0315937 74.6106 0 0.807384 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0572372 0 10.6093 0

CAGE analysis