Hb_064885_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig64885: 6501-9716
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52468: 7928-8269 , PASA_asmbl_52469: 9350-9676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064885_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_116103_010 0.0671403417 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
3 Hb_001002_020 0.0823311852 - - ATP binding protein, putative [Ricinus communis]
4 Hb_005928_010 0.082940678 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
5 Hb_000904_110 0.0830269374 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
6 Hb_054165_010 0.0855073427 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_000277_030 0.0932099344 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_173029_010 0.0958176226 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_136973_020 0.0983099628 - - -
10 Hb_002849_010 0.0983400624 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
11 Hb_000628_050 0.1116007044 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_003847_090 0.1156985887 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
13 Hb_004924_020 0.116535073 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000668_220 0.1180503214 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
15 Hb_000248_080 0.1199230068 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_046610_010 0.1207567632 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_011028_040 0.1225202563 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_004314_020 0.1255256749 - - Auxin-responsive GH3 family protein [Theobroma cacao]
19 Hb_002133_010 0.1259980247 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_004241_190 0.1324213218 - - -

Gene co-expression network

sample Hb_064885_010 Hb_064885_010 Hb_116103_010 Hb_116103_010 Hb_064885_010--Hb_116103_010 Hb_001002_020 Hb_001002_020 Hb_064885_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_064885_010--Hb_005928_010 Hb_000904_110 Hb_000904_110 Hb_064885_010--Hb_000904_110 Hb_054165_010 Hb_054165_010 Hb_064885_010--Hb_054165_010 Hb_000277_030 Hb_000277_030 Hb_064885_010--Hb_000277_030 Hb_116103_010--Hb_000904_110 Hb_002849_010 Hb_002849_010 Hb_116103_010--Hb_002849_010 Hb_004924_020 Hb_004924_020 Hb_116103_010--Hb_004924_020 Hb_173029_010 Hb_173029_010 Hb_116103_010--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_116103_010--Hb_000668_220 Hb_001002_020--Hb_054165_010 Hb_001002_020--Hb_005928_010 Hb_001002_020--Hb_000277_030 Hb_136973_020 Hb_136973_020 Hb_001002_020--Hb_136973_020 Hb_003847_090 Hb_003847_090 Hb_001002_020--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_001002_020--Hb_006083_010 Hb_005928_010--Hb_000277_030 Hb_005928_010--Hb_136973_020 Hb_005928_010--Hb_054165_010 Hb_000248_080 Hb_000248_080 Hb_005928_010--Hb_000248_080 Hb_005928_010--Hb_003847_090 Hb_000904_110--Hb_173029_010 Hb_000904_110--Hb_004924_020 Hb_000904_110--Hb_002849_010 Hb_000904_110--Hb_000668_220 Hb_054165_010--Hb_000277_030 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_054165_010--Hb_006083_010 Hb_054165_010--Hb_136973_020 Hb_000277_030--Hb_136973_020 Hb_000277_030--Hb_003847_090 Hb_000277_030--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00735319 1.86435 2.35142 1.95926 0 0.010678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.013478 0.0106063 0 0.00420511 0.0226573

CAGE analysis