Hb_064997_010

Information

Type -
Description -
Location Contig64997: 364-1272
Sequence    

Annotation

kegg
ID rcu:RCOM_0340700
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID KDP27153.1
description hypothetical protein JCGZ_19852 [Jatropha curcas]
swissprot
ID Q9ZQA1
description Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
trembl
ID A0A067JWG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19852 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52518: 827-1301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064997_010 0.0 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
2 Hb_001153_220 0.0984149674 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
3 Hb_003018_190 0.1004306126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
4 Hb_000836_070 0.1031986537 - - protein binding protein, putative [Ricinus communis]
5 Hb_000997_400 0.1035859701 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
6 Hb_008311_010 0.1040173436 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
7 Hb_025214_130 0.1042650874 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
8 Hb_000377_060 0.1082816006 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_000297_200 0.1096772324 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
10 Hb_010710_040 0.1146857411 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_004128_180 0.1194608585 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000156_100 0.125376182 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
13 Hb_000920_240 0.1277659484 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
14 Hb_023292_010 0.127806594 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_000162_040 0.1292092351 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
16 Hb_002794_030 0.1302719669 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
17 Hb_008453_090 0.1305216545 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
18 Hb_000059_220 0.1307023904 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
19 Hb_131864_040 0.1310529694 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
20 Hb_001514_230 0.1325975621 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_064997_010 Hb_064997_010 Hb_001153_220 Hb_001153_220 Hb_064997_010--Hb_001153_220 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_025214_130 Hb_025214_130 Hb_064997_010--Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_001959_160 Hb_001959_160 Hb_001153_220--Hb_001959_160 Hb_024952_010 Hb_024952_010 Hb_001153_220--Hb_024952_010 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_000836_070--Hb_005488_010 Hb_004899_320 Hb_004899_320 Hb_000836_070--Hb_004899_320 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_000836_070--Hb_003018_190 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_000997_400--Hb_010710_040 Hb_000046_110 Hb_000046_110 Hb_008311_010--Hb_000046_110 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_008311_010--Hb_000001_050 Hb_008311_010--Hb_000836_070 Hb_008311_010--Hb_004899_320 Hb_001109_020 Hb_001109_020 Hb_008311_010--Hb_001109_020 Hb_007429_030 Hb_007429_030 Hb_025214_130--Hb_007429_030 Hb_004414_050 Hb_004414_050 Hb_025214_130--Hb_004414_050 Hb_002794_030 Hb_002794_030 Hb_025214_130--Hb_002794_030 Hb_025214_130--Hb_001959_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43774 0.680539 0.31645 0.672099 0.909263 2.36299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47969 2.57485 4.04877 0.409519 0.159935

CAGE analysis