Hb_065379_010

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig65379: 6-758
Sequence    

Annotation

kegg
ID rcu:RCOM_1731940
description hypothetical protein
nr
ID XP_012075316.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067KGU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09486 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065379_010 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_000840_170 0.0945746323 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
3 Hb_000988_030 0.1409961437 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000185_150 0.1539712556 - - Heme-binding protein, putative [Ricinus communis]
5 Hb_012528_030 0.1932661986 - - -
6 Hb_044086_010 0.1964135561 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_004074_030 0.2016875138 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003914_030 0.2084710834 - - -
9 Hb_000347_270 0.2112264999 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
10 Hb_000086_050 0.2132217037 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
11 Hb_045870_010 0.2156071452 - - -
12 Hb_003638_010 0.216102359 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
13 Hb_000538_260 0.2216855103 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
14 Hb_002173_020 0.2240741839 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
15 Hb_010346_020 0.2242229362 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
16 Hb_003001_040 0.2247085687 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
17 Hb_001231_030 0.2255395046 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
18 Hb_005736_050 0.2256320937 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
19 Hb_000197_290 0.2267882961 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
20 Hb_005529_030 0.2277243762 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]

Gene co-expression network

sample Hb_065379_010 Hb_065379_010 Hb_000840_170 Hb_000840_170 Hb_065379_010--Hb_000840_170 Hb_000988_030 Hb_000988_030 Hb_065379_010--Hb_000988_030 Hb_000185_150 Hb_000185_150 Hb_065379_010--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_065379_010--Hb_012528_030 Hb_044086_010 Hb_044086_010 Hb_065379_010--Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_065379_010--Hb_004074_030 Hb_000840_170--Hb_000185_150 Hb_000840_170--Hb_012528_030 Hb_000840_170--Hb_044086_010 Hb_000840_170--Hb_000988_030 Hb_005529_030 Hb_005529_030 Hb_000840_170--Hb_005529_030 Hb_000988_030--Hb_000185_150 Hb_010346_020 Hb_010346_020 Hb_000988_030--Hb_010346_020 Hb_003638_010 Hb_003638_010 Hb_000988_030--Hb_003638_010 Hb_000732_070 Hb_000732_070 Hb_000988_030--Hb_000732_070 Hb_000345_490 Hb_000345_490 Hb_000988_030--Hb_000345_490 Hb_000086_050 Hb_000086_050 Hb_000185_150--Hb_000086_050 Hb_000024_120 Hb_000024_120 Hb_000185_150--Hb_000024_120 Hb_000185_150--Hb_003638_010 Hb_009449_090 Hb_009449_090 Hb_000185_150--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000185_150--Hb_005054_190 Hb_012528_020 Hb_012528_020 Hb_012528_030--Hb_012528_020 Hb_000327_080 Hb_000327_080 Hb_012528_030--Hb_000327_080 Hb_021537_010 Hb_021537_010 Hb_012528_030--Hb_021537_010 Hb_176368_010 Hb_176368_010 Hb_012528_030--Hb_176368_010 Hb_004254_100 Hb_004254_100 Hb_012528_030--Hb_004254_100 Hb_012528_030--Hb_009449_090 Hb_044086_010--Hb_004074_030 Hb_001769_130 Hb_001769_130 Hb_044086_010--Hb_001769_130 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_044086_010--Hb_000988_030 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_004074_030--Hb_002774_150 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.0734 80.7278 33.2141 21.7579 36.3606 32.8074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92941 1.20846 0 10.7615 59.3439

CAGE analysis