Hb_065500_010

Information

Type -
Description -
Location Contig65500: 11708-13601
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52645: 10810-10959 , PASA_asmbl_52646: 11333-11445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_010 0.0 - - -
2 Hb_005217_040 0.1191623013 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
3 Hb_011032_010 0.1459363789 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_013749_060 0.1648498889 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
5 Hb_053575_020 0.1650349498 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
6 Hb_111985_040 0.1688563749 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
7 Hb_001410_010 0.1688586194 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
8 Hb_147218_010 0.1693203108 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_000679_210 0.17054361 - - grr1, plant, putative [Ricinus communis]
10 Hb_001485_010 0.1727140603 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_000875_070 0.1810942643 - - -
12 Hb_009296_050 0.1815742799 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
13 Hb_001304_130 0.1826192539 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
14 Hb_053125_010 0.1846573863 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
15 Hb_169051_010 0.1866869211 - - JHL06B08.1 [Jatropha curcas]
16 Hb_003517_020 0.189212112 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
17 Hb_086336_010 0.1899889931 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_000789_240 0.1905256769 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
19 Hb_003125_180 0.192213322 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
20 Hb_007546_030 0.1924124656 - - transcription cofactor, putative [Ricinus communis]

Gene co-expression network

sample Hb_065500_010 Hb_065500_010 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010 Hb_005217_040--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_005217_040--Hb_003125_180 Hb_005217_040--Hb_053575_020 Hb_000019_170 Hb_000019_170 Hb_005217_040--Hb_000019_170 Hb_169051_010 Hb_169051_010 Hb_005217_040--Hb_169051_010 Hb_011032_010--Hb_003125_180 Hb_011032_010--Hb_053575_020 Hb_011032_010--Hb_169051_010 Hb_003058_200 Hb_003058_200 Hb_011032_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_057079_020 Hb_057079_020 Hb_013749_060--Hb_057079_020 Hb_000589_220 Hb_000589_220 Hb_013749_060--Hb_000589_220 Hb_000236_110 Hb_000236_110 Hb_013749_060--Hb_000236_110 Hb_013749_060--Hb_001410_010 Hb_002928_120 Hb_002928_120 Hb_013749_060--Hb_002928_120 Hb_013749_060--Hb_111985_040 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_000002_270 Hb_000002_270 Hb_111985_040--Hb_000002_270 Hb_111985_040--Hb_001410_010 Hb_000792_040 Hb_000792_040 Hb_111985_040--Hb_000792_040 Hb_002122_080 Hb_002122_080 Hb_111985_040--Hb_002122_080 Hb_001625_010 Hb_001625_010 Hb_111985_040--Hb_001625_010 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.476681 5.25723 0.251524 3.27047 1.37821 0.70056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.332206 0.457016 0.81371 5.47676 4.63757

CAGE analysis