Hb_065500_020

Information

Type -
Description -
Location Contig65500: 15630-34290
Sequence    

Annotation

kegg
ID tcc:TCM_033967
description Exocyst complex component sec3A isoform 1
nr
ID XP_007017431.1
description Exocyst complex component sec3A isoform 1 [Theobroma cacao]
swissprot
ID Q9SX85
description Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1
trembl
ID A0A061FCD4
description Exocyst complex component sec3A isoform 1 OS=Theobroma cacao GN=TCM_033967 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52650: 15650-34270 , PASA_asmbl_52651: 22265-30926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_020 0.0 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
2 Hb_060980_010 0.050423315 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_002749_060 0.056165669 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
4 Hb_016172_030 0.0574570188 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
5 Hb_011819_020 0.0576176518 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
6 Hb_021165_010 0.0619335925 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
7 Hb_008289_040 0.0631820119 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
8 Hb_027506_010 0.0642980181 - - PREDICTED: cullin-4 [Jatropha curcas]
9 Hb_003280_020 0.0650904247 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
10 Hb_001587_030 0.0651292152 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
11 Hb_000409_050 0.0659614213 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
12 Hb_001703_050 0.0686234096 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_033312_040 0.0711145393 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
14 Hb_003038_040 0.0712793484 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
15 Hb_002890_130 0.0723394471 - - tip120, putative [Ricinus communis]
16 Hb_003758_010 0.0726342785 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
17 Hb_012330_010 0.0728227871 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
18 Hb_000317_100 0.0735369205 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
19 Hb_012733_070 0.0738337295 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
20 Hb_005489_040 0.0743837963 - - PREDICTED: cullin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_065500_020 Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040 Hb_060980_010--Hb_016172_030 Hb_027506_010 Hb_027506_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89564 10.2894 12.2744 14.6981 8.3852 8.73173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24072 5.28373 8.09935 15.4315 12.6152

CAGE analysis