Hb_065500_030

Information

Type -
Description -
Location Contig65500: 37299-38960
Sequence    

Annotation

kegg
ID rcu:RCOM_1593320
description Protein ariadne-1, putative
nr
ID XP_012071755.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
swissprot
ID Q84RR0
description Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
trembl
ID A0A067KQF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04371 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable e3 ubiquitin-protein ligase ari8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52653: 37209-37406 , PASA_asmbl_52654: 37526-38349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_030 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
2 Hb_002005_120 0.0717536056 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
3 Hb_011828_030 0.0955008551 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
4 Hb_004162_120 0.097653866 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
5 Hb_000836_020 0.1044399351 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
6 Hb_000117_070 0.1096026323 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000599_130 0.1106130477 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
8 Hb_006907_140 0.1109742413 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009897_010 0.112606903 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_003398_070 0.1130058995 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
11 Hb_001989_050 0.1130858578 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
12 Hb_002016_060 0.1197804128 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_000917_100 0.119886409 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
14 Hb_004310_040 0.1200801573 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002400_140 0.1205854176 - - protein kinase, putative [Ricinus communis]
16 Hb_011861_080 0.1211716734 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
17 Hb_003604_050 0.1247432584 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
18 Hb_001662_180 0.1252039528 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
19 Hb_003060_090 0.1252186068 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
20 Hb_000751_140 0.1252431888 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]

Gene co-expression network

sample Hb_065500_030 Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_004162_120 Hb_004162_120 Hb_065500_030--Hb_004162_120 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_001699_280 Hb_001699_280 Hb_011828_030--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_011828_030--Hb_000105_040 Hb_011947_050 Hb_011947_050 Hb_011828_030--Hb_011947_050 Hb_000069_410 Hb_000069_410 Hb_011828_030--Hb_000069_410 Hb_011828_030--Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_011828_030--Hb_003581_170 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_080451_010 Hb_080451_010 Hb_004162_120--Hb_080451_010 Hb_004162_120--Hb_002005_120 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010 Hb_000896_060 Hb_000896_060 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000526_060 Hb_000526_060 Hb_000117_070--Hb_000526_060 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_000175_350 Hb_000175_350 Hb_000599_130--Hb_000175_350 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000120_420 Hb_000120_420 Hb_000599_130--Hb_000120_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91229 15.2196 2.62074 5.48637 4.34729 6.1226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02761 0.895968 1.68957 7.92729 5.00331

CAGE analysis