Hb_065500_050

Information

Type -
Description -
Location Contig65500: 47650-52804
Sequence    

Annotation

kegg
ID rcu:RCOM_0251400
description lipoate-protein ligase B, putative
nr
ID XP_002529793.1
description lipoate-protein ligase B, putative [Ricinus communis]
swissprot
ID P0C7R2
description Putative lipoyltransferase-like protein, chloroplastic OS=Arabidopsis thaliana GN=At1g47578 PE=3 SV=1
trembl
ID B9SUW2
description Lipoate-protein ligase B, putative OS=Ricinus communis GN=RCOM_0251400 PE=3 SV=1
Gene Ontology
ID GO:0005737
description plastidial lipoyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52657: 47648-52838
cDNA
(Sanger)
(ID:Location)		 024_F24.ab1: 47650-51850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_050 0.0 - - lipoate-protein ligase B, putative [Ricinus communis]
2 Hb_024650_020 0.0661654824 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
3 Hb_000173_170 0.0806895472 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
4 Hb_001191_100 0.0885167214 - - F-actin capping protein beta subunit [Populus trichocarpa]
5 Hb_003376_120 0.1006205437 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
6 Hb_000861_040 0.1007103671 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
7 Hb_002326_030 0.1037894526 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
8 Hb_000956_010 0.1051306171 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_023386_080 0.1057413302 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
10 Hb_007760_030 0.1058151312 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
11 Hb_006693_030 0.1061410587 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
12 Hb_000634_100 0.1063557225 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
13 Hb_007152_020 0.1086688797 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
14 Hb_001366_230 0.1105230407 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000260_080 0.1112054857 - - thioredoxin H-type 1 [Hevea brasiliensis]
16 Hb_002368_050 0.1123372731 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002307_090 0.1128699651 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
18 Hb_002282_020 0.1135211315 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
19 Hb_012522_030 0.1135490268 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_005357_150 0.1150171869 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_065500_050 Hb_065500_050 Hb_024650_020 Hb_024650_020 Hb_065500_050--Hb_024650_020 Hb_000173_170 Hb_000173_170 Hb_065500_050--Hb_000173_170 Hb_001191_100 Hb_001191_100 Hb_065500_050--Hb_001191_100 Hb_003376_120 Hb_003376_120 Hb_065500_050--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_065500_050--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_065500_050--Hb_002326_030 Hb_023386_080 Hb_023386_080 Hb_024650_020--Hb_023386_080 Hb_002447_030 Hb_002447_030 Hb_024650_020--Hb_002447_030 Hb_002282_020 Hb_002282_020 Hb_024650_020--Hb_002282_020 Hb_001427_120 Hb_001427_120 Hb_024650_020--Hb_001427_120 Hb_044662_070 Hb_044662_070 Hb_024650_020--Hb_044662_070 Hb_007760_030 Hb_007760_030 Hb_000173_170--Hb_007760_030 Hb_007152_020 Hb_007152_020 Hb_000173_170--Hb_007152_020 Hb_000173_170--Hb_001191_100 Hb_000173_170--Hb_002326_030 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_001191_100--Hb_001366_230 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003408_030 Hb_003408_030 Hb_003376_120--Hb_003408_030 Hb_003376_120--Hb_023386_080 Hb_003376_120--Hb_044662_070 Hb_007924_020 Hb_007924_020 Hb_003376_120--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003376_120--Hb_000627_120 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_002326_030--Hb_007229_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8751 1.11375 4.65845 1.73245 14.3323 13.1395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.661 19.6421 22.218 2.37864 2.92638

CAGE analysis