Hb_065500_060

Information

Type -
Description -
Location Contig65500: 53325-55752
Sequence    

Annotation

kegg
ID rcu:RCOM_1593300
description hypothetical protein
nr
ID XP_012071753.1
description PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04369 PE=4 SV=1
Gene Ontology
ID GO:0009941
description trna-processing ribonuclease bn

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52658: 53179-54010 , PASA_asmbl_52659: 54018-55707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_060 0.0 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
2 Hb_003226_140 0.0689084771 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
3 Hb_000883_020 0.0705060492 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_000342_130 0.072479001 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
5 Hb_000181_130 0.073586274 - - ATP binding protein, putative [Ricinus communis]
6 Hb_009545_080 0.0763176395 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
7 Hb_000331_260 0.0765611803 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
8 Hb_002592_060 0.0768422538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012395_230 0.0783980587 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_002235_250 0.0800209607 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
11 Hb_000212_330 0.0805356738 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001357_350 0.0819254459 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000465_090 0.0853561735 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
14 Hb_022693_140 0.085954626 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
15 Hb_004109_280 0.0873228533 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
16 Hb_000035_180 0.0879510933 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
17 Hb_009898_050 0.0881980943 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_000915_260 0.0884602235 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
19 Hb_002641_060 0.0886780706 - - prefoldin subunit, putative [Ricinus communis]
20 Hb_000110_310 0.0887978969 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_065500_060 Hb_065500_060 Hb_003226_140 Hb_003226_140 Hb_065500_060--Hb_003226_140 Hb_000883_020 Hb_000883_020 Hb_065500_060--Hb_000883_020 Hb_000342_130 Hb_000342_130 Hb_065500_060--Hb_000342_130 Hb_000181_130 Hb_000181_130 Hb_065500_060--Hb_000181_130 Hb_009545_080 Hb_009545_080 Hb_065500_060--Hb_009545_080 Hb_000331_260 Hb_000331_260 Hb_065500_060--Hb_000331_260 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_000120_790 Hb_000120_790 Hb_000342_130--Hb_000120_790 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_000173_290 Hb_000173_290 Hb_000342_130--Hb_000173_290 Hb_000342_130--Hb_000883_020 Hb_000342_130--Hb_000331_260 Hb_009328_020 Hb_009328_020 Hb_000181_130--Hb_009328_020 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_009545_080--Hb_002997_080 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_009545_080--Hb_032986_010 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75343 2.55742 5.84666 4.24693 5.36061 6.70356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.08222 5.49443 5.06024 3.65824 4.99044

CAGE analysis