Hb_065521_010

Information

Type -
Description -
Location Contig65521: 8117-13359
Sequence    

Annotation

kegg
ID rcu:RCOM_1709230
description oligopeptide transporter, putative
nr
ID XP_012079487.1
description PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID A0A067LBQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17424 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52661: 8076-13207
cDNA
(Sanger)
(ID:Location)		 019_D18.ab1: 10012-13207

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065521_010 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
2 Hb_007875_020 0.0361733096 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_029510_090 0.0868257635 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
4 Hb_002448_020 0.0871694968 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_168319_060 0.089792998 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
6 Hb_014967_020 0.0915746787 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_007386_030 0.0918173371 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
8 Hb_000258_210 0.0924776113 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
9 Hb_000254_060 0.1028893843 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007017_100 0.1037525675 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
11 Hb_000014_080 0.1088806112 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
12 Hb_004667_030 0.1105712313 - - hypothetical protein VITISV_034568 [Vitis vinifera]
13 Hb_009641_040 0.1208839837 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
14 Hb_001040_200 0.1256409757 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
15 Hb_006846_030 0.1269783442 - - respiratory burst oxidase A [Manihot esculenta]
16 Hb_000127_080 0.1291905414 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
17 Hb_001568_010 0.1316050292 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019026_050 0.1327650271 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001778_040 0.132980692 - - hypothetical protein VITISV_021035 [Vitis vinifera]
20 Hb_000594_160 0.1334643925 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_065521_010 Hb_065521_010 Hb_007875_020 Hb_007875_020 Hb_065521_010--Hb_007875_020 Hb_029510_090 Hb_029510_090 Hb_065521_010--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_168319_060 Hb_168319_060 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_007386_030 Hb_007386_030 Hb_065521_010--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007875_020--Hb_007386_030 Hb_007875_020--Hb_029510_090 Hb_007875_020--Hb_168319_060 Hb_007875_020--Hb_002448_020 Hb_029510_090--Hb_168319_060 Hb_029510_090--Hb_007386_030 Hb_029510_090--Hb_002448_020 Hb_000254_060 Hb_000254_060 Hb_029510_090--Hb_000254_060 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_060152_010 Hb_060152_010 Hb_168319_060--Hb_060152_010 Hb_168319_060--Hb_000254_060 Hb_000258_210 Hb_000258_210 Hb_014967_020--Hb_000258_210 Hb_009641_040 Hb_009641_040 Hb_014967_020--Hb_009641_040 Hb_059000_010 Hb_059000_010 Hb_014967_020--Hb_059000_010 Hb_014967_020--Hb_007875_020 Hb_004607_160 Hb_004607_160 Hb_014967_020--Hb_004607_160 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025441 4.24831 7.42509 19.0017 0.0220591 0.00739303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.035662 0 0 17.6802 13.2395

CAGE analysis