Hb_065525_030

Information

Type -
Description -
Location Contig65525: 28249-29205
Sequence    

Annotation

kegg
ID rcu:RCOM_0996630
description hypothetical protein
nr
ID XP_012089431.1
description PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52669: 28350-29763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_030 0.0 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
2 Hb_005000_100 0.1263142092 - - PCI domain-containing protein 2 [Morus notabilis]
3 Hb_004361_050 0.1358713621 - - ring finger containing protein, putative [Ricinus communis]
4 Hb_004608_020 0.1396585357 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
5 Hb_004881_050 0.1414516191 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_000457_060 0.1423977444 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
7 Hb_000248_050 0.1443054967 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
8 Hb_000152_740 0.1475431235 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
9 Hb_006114_020 0.1500701983 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002675_060 0.1511800446 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
11 Hb_000116_170 0.1538809856 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
12 Hb_005129_050 0.1543047435 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
13 Hb_001221_040 0.1543536214 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
14 Hb_000343_230 0.1553071461 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
15 Hb_000631_150 0.1559756773 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
16 Hb_007380_110 0.1567694476 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
17 Hb_000028_030 0.1580069895 - - amidase, putative [Ricinus communis]
18 Hb_021409_170 0.1580523945 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
19 Hb_007668_020 0.1600664116 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
20 Hb_005214_060 0.1601077455 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_065525_030 Hb_065525_030 Hb_005000_100 Hb_005000_100 Hb_065525_030--Hb_005000_100 Hb_004361_050 Hb_004361_050 Hb_065525_030--Hb_004361_050 Hb_004608_020 Hb_004608_020 Hb_065525_030--Hb_004608_020 Hb_004881_050 Hb_004881_050 Hb_065525_030--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_065525_030--Hb_000457_060 Hb_000248_050 Hb_000248_050 Hb_065525_030--Hb_000248_050 Hb_005000_100--Hb_004881_050 Hb_000152_740 Hb_000152_740 Hb_005000_100--Hb_000152_740 Hb_006913_040 Hb_006913_040 Hb_005000_100--Hb_006913_040 Hb_024990_010 Hb_024990_010 Hb_005000_100--Hb_024990_010 Hb_003581_020 Hb_003581_020 Hb_005000_100--Hb_003581_020 Hb_001221_040 Hb_001221_040 Hb_005000_100--Hb_001221_040 Hb_005214_060 Hb_005214_060 Hb_004361_050--Hb_005214_060 Hb_001196_070 Hb_001196_070 Hb_004361_050--Hb_001196_070 Hb_002675_060 Hb_002675_060 Hb_004361_050--Hb_002675_060 Hb_152079_010 Hb_152079_010 Hb_004361_050--Hb_152079_010 Hb_004361_050--Hb_024990_010 Hb_001575_040 Hb_001575_040 Hb_004361_050--Hb_001575_040 Hb_009118_010 Hb_009118_010 Hb_004608_020--Hb_009118_010 Hb_000631_150 Hb_000631_150 Hb_004608_020--Hb_000631_150 Hb_000116_170 Hb_000116_170 Hb_004608_020--Hb_000116_170 Hb_004608_020--Hb_000457_060 Hb_000017_340 Hb_000017_340 Hb_004608_020--Hb_000017_340 Hb_000078_100 Hb_000078_100 Hb_004608_020--Hb_000078_100 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_000335_010 Hb_000335_010 Hb_000457_060--Hb_000335_010 Hb_000370_030 Hb_000370_030 Hb_000457_060--Hb_000370_030 Hb_000789_080 Hb_000789_080 Hb_000457_060--Hb_000789_080 Hb_000457_060--Hb_000631_150 Hb_000248_050--Hb_000152_740 Hb_118301_010 Hb_118301_010 Hb_000248_050--Hb_118301_010 Hb_006455_080 Hb_006455_080 Hb_000248_050--Hb_006455_080 Hb_002918_070 Hb_002918_070 Hb_000248_050--Hb_002918_070 Hb_000248_050--Hb_004881_050 Hb_005000_270 Hb_005000_270 Hb_000248_050--Hb_005000_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6529 4.24466 3.005 6.81473 26.292 42.0291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8127 4.04257 4.17301 22.039 3.86401

CAGE analysis