Hb_065525_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig65525: 38547-39245
Sequence    

Annotation

kegg
ID rcu:RCOM_0546450
description Ethylene-responsive transcription factor, putative
nr
ID NP_001295747.1
description ethylene-responsive transcription factor 3-like [Jatropha curcas]
swissprot
ID Q9LDE4
description Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1
trembl
ID A0A068BGH5
description C-repeat binding transcription factor 2 OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_040 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
2 Hb_000732_010 0.060584805 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
3 Hb_002754_010 0.0623841675 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_005054_110 0.0641865688 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
5 Hb_000331_550 0.0658991897 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
6 Hb_005463_100 0.0667124532 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
7 Hb_000069_310 0.067829006 - - ubiquitin ligase [Cucumis melo subsp. melo]
8 Hb_000207_330 0.0684625309 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
9 Hb_023344_120 0.0685742219 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
10 Hb_027380_130 0.0688565352 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
11 Hb_015934_040 0.0695430947 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
12 Hb_001205_240 0.0697044142 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
13 Hb_000260_350 0.0697919596 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003680_120 0.0707789988 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
15 Hb_000327_270 0.0721778396 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
16 Hb_006455_120 0.0723944903 - - n6-DNA-methyltransferase, putative [Ricinus communis]
17 Hb_000003_250 0.0730923114 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
18 Hb_002450_020 0.0736796771 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
19 Hb_093458_040 0.0738148225 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_022115_020 0.07470172 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_065525_040 Hb_065525_040 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_002754_010 Hb_002754_010 Hb_065525_040--Hb_002754_010 Hb_005054_110 Hb_005054_110 Hb_065525_040--Hb_005054_110 Hb_000331_550 Hb_000331_550 Hb_065525_040--Hb_000331_550 Hb_005463_100 Hb_005463_100 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310 Hb_002232_410 Hb_002232_410 Hb_000732_010--Hb_002232_410 Hb_000732_010--Hb_000331_550 Hb_002205_110 Hb_002205_110 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_001163_050 Hb_001163_050 Hb_000331_550--Hb_001163_050 Hb_000373_070 Hb_000373_070 Hb_000331_550--Hb_000373_070 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002046_180 Hb_002046_180 Hb_005463_100--Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_009767_110 Hb_009767_110 Hb_005463_100--Hb_009767_110 Hb_000069_310--Hb_013358_040 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_000915_180 Hb_000915_180 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8512 20.7776 15.5327 25.17 15.8547 18.8817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1311 22.114 27.1734 16.259 20.6672

CAGE analysis