Hb_065525_080

Information

Type -
Description -
Location Contig65525: 85038-89499
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05400g
description POPTRDRAFT_420042; Ubiquitin-conjugating enzyme E2 7 family protein
nr
ID XP_011027464.1
description PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
swissprot
ID P42747
description Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=1 SV=1
trembl
ID B9HMG1
description Ubiquitin-conjugating enzyme E2 7 family protein OS=Populus trichocarpa GN=POPTR_0008s05400g PE=3 SV=2
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 7 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52675: 87084-88967 , PASA_asmbl_52676: 85115-89472 , PASA_asmbl_52677: 88487-88683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_080 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
2 Hb_093666_010 0.0562358348 - - BnaC05g06620D [Brassica napus]
3 Hb_001221_440 0.0684168565 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
4 Hb_113853_010 0.0698737504 - - 50S ribosomal protein L2, putative [Ricinus communis]
5 Hb_001623_270 0.0699338228 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
6 Hb_000375_390 0.0768551535 - - poly-A binding protein, putative [Ricinus communis]
7 Hb_183433_010 0.0772425285 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_001541_050 0.078145057 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
9 Hb_005288_130 0.0803248716 - - protein with unknown function [Ricinus communis]
10 Hb_030414_040 0.0835625009 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
11 Hb_021374_030 0.0839887842 - - hypothetical protein RCOM_0351490 [Ricinus communis]
12 Hb_000120_210 0.0845189839 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
13 Hb_002774_190 0.0859058258 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
14 Hb_005494_010 0.0861143905 - - catalytic, putative [Ricinus communis]
15 Hb_002876_300 0.086323435 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
16 Hb_000111_170 0.0873369667 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
17 Hb_004096_240 0.0878305961 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_002173_070 0.0893490321 - - MRG family protein isoform 2 [Theobroma cacao]
19 Hb_157023_020 0.089800709 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000061_180 0.0907101198 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_065525_080 Hb_065525_080 Hb_093666_010 Hb_093666_010 Hb_065525_080--Hb_093666_010 Hb_001221_440 Hb_001221_440 Hb_065525_080--Hb_001221_440 Hb_113853_010 Hb_113853_010 Hb_065525_080--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_065525_080--Hb_001623_270 Hb_000375_390 Hb_000375_390 Hb_065525_080--Hb_000375_390 Hb_183433_010 Hb_183433_010 Hb_065525_080--Hb_183433_010 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_093666_010--Hb_183433_010 Hb_000111_170 Hb_000111_170 Hb_001221_440--Hb_000111_170 Hb_000019_190 Hb_000019_190 Hb_001221_440--Hb_000019_190 Hb_001635_110 Hb_001635_110 Hb_001221_440--Hb_001635_110 Hb_171900_090 Hb_171900_090 Hb_001221_440--Hb_171900_090 Hb_002014_010 Hb_002014_010 Hb_001221_440--Hb_002014_010 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_113853_010--Hb_021374_030 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_000375_390--Hb_021374_030 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4139 17.8479 36.4368 28.397 16.7339 18.1478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7606 26.9406 7.64673 21.7945 32.6301

CAGE analysis