Hb_065525_090

Information

Type -
Description -
Location Contig65525: 91445-93007
Sequence    

Annotation

kegg
ID vvi:100265096
description CASP-like protein 4C1
nr
ID XP_002283841.1
description PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
swissprot
ID B9HTK2
description CASP-like protein 4C2 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1
trembl
ID A0A061FLP0
description CASP-like protein OS=Theobroma cacao GN=TCM_042805 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52678: 91550-93152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_090 0.0 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
2 Hb_002660_070 0.0819536747 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
3 Hb_034406_030 0.0855932389 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
4 Hb_001545_160 0.0960173861 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
5 Hb_020805_130 0.0966698785 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_002835_180 0.096760262 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000120_960 0.0996688734 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_000258_260 0.0998335389 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
9 Hb_013399_050 0.0999064397 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
10 Hb_000327_060 0.1004418956 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
11 Hb_001902_140 0.1078009302 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
12 Hb_000603_080 0.1091563398 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
13 Hb_011512_040 0.1095451258 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
14 Hb_000007_140 0.1101525929 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
15 Hb_158445_010 0.1102687391 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
16 Hb_009803_050 0.110347473 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
17 Hb_000340_570 0.110390413 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
18 Hb_000069_420 0.1113497555 - - Beclin-1, putative [Ricinus communis]
19 Hb_003994_260 0.1119146484 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_000147_040 0.1121002357 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]

Gene co-expression network

sample Hb_065525_090 Hb_065525_090 Hb_002660_070 Hb_002660_070 Hb_065525_090--Hb_002660_070 Hb_034406_030 Hb_034406_030 Hb_065525_090--Hb_034406_030 Hb_001545_160 Hb_001545_160 Hb_065525_090--Hb_001545_160 Hb_020805_130 Hb_020805_130 Hb_065525_090--Hb_020805_130 Hb_002835_180 Hb_002835_180 Hb_065525_090--Hb_002835_180 Hb_000120_960 Hb_000120_960 Hb_065525_090--Hb_000120_960 Hb_002660_070--Hb_000120_960 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_002660_070--Hb_020805_130 Hb_000069_420 Hb_000069_420 Hb_034406_030--Hb_000069_420 Hb_001663_050 Hb_001663_050 Hb_034406_030--Hb_001663_050 Hb_003994_260 Hb_003994_260 Hb_034406_030--Hb_003994_260 Hb_001902_140 Hb_001902_140 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_007416_320 Hb_007416_320 Hb_034406_030--Hb_007416_320 Hb_000340_570 Hb_000340_570 Hb_001545_160--Hb_000340_570 Hb_000327_060 Hb_000327_060 Hb_001545_160--Hb_000327_060 Hb_003502_060 Hb_003502_060 Hb_001545_160--Hb_003502_060 Hb_158445_010 Hb_158445_010 Hb_001545_160--Hb_158445_010 Hb_002304_160 Hb_002304_160 Hb_001545_160--Hb_002304_160 Hb_012423_030 Hb_012423_030 Hb_001545_160--Hb_012423_030 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_020805_130--Hb_001507_040 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_002878_020 Hb_002878_020 Hb_002835_180--Hb_002878_020 Hb_002835_180--Hb_034406_030 Hb_012107_060 Hb_012107_060 Hb_002835_180--Hb_012107_060 Hb_011214_020 Hb_011214_020 Hb_002835_180--Hb_011214_020 Hb_000258_260 Hb_000258_260 Hb_002835_180--Hb_000258_260 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51539 5.5957 4.76439 4.87353 3.28451 2.26446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3499 12.1802 13.2126 6.53735 5.99185

CAGE analysis