Hb_065755_020

Information

Type -
Description -
Location Contig65755: 14823-16575
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_002518256.1
description choline monooxygenase, putative [Ricinus communis]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9RWY7
description Choline monooxygenase, putative OS=Ricinus communis GN=RCOM_1706760 PE=4 SV=1
Gene Ontology
ID GO:0005488
description choline monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52841: 15162-16070 , PASA_asmbl_52842: 16460-21536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065755_020 0.0 - - choline monooxygenase, putative [Ricinus communis]
2 Hb_095471_020 0.1337968593 - - -
3 Hb_078954_010 0.146038979 - - hypothetical protein RCOM_0841800 [Ricinus communis]
4 Hb_046109_010 0.1470650593 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_004667_040 0.1511049918 - - ATP binding protein, putative [Ricinus communis]
6 Hb_032202_050 0.1726481785 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
7 Hb_002965_070 0.1755414173 - - PREDICTED: extensin [Jatropha curcas]
8 Hb_033053_010 0.1773484502 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_029689_010 0.1808512203 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_047442_010 0.182265245 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_001776_200 0.1839083227 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
12 Hb_000809_140 0.1841947989 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
13 Hb_074184_010 0.1866904873 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_000340_560 0.1878382994 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005724_050 0.1892665907 - - -
16 Hb_000069_430 0.1921873684 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
17 Hb_183192_010 0.1928365316 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
18 Hb_001294_040 0.1958813397 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_007574_050 0.1976220579 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
20 Hb_000111_390 0.1979315884 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_065755_020 Hb_065755_020 Hb_095471_020 Hb_095471_020 Hb_065755_020--Hb_095471_020 Hb_078954_010 Hb_078954_010 Hb_065755_020--Hb_078954_010 Hb_046109_010 Hb_046109_010 Hb_065755_020--Hb_046109_010 Hb_004667_040 Hb_004667_040 Hb_065755_020--Hb_004667_040 Hb_032202_050 Hb_032202_050 Hb_065755_020--Hb_032202_050 Hb_002965_070 Hb_002965_070 Hb_065755_020--Hb_002965_070 Hb_001776_200 Hb_001776_200 Hb_095471_020--Hb_001776_200 Hb_095471_020--Hb_004667_040 Hb_095471_020--Hb_078954_010 Hb_005724_050 Hb_005724_050 Hb_095471_020--Hb_005724_050 Hb_001294_040 Hb_001294_040 Hb_095471_020--Hb_001294_040 Hb_002897_010 Hb_002897_010 Hb_078954_010--Hb_002897_010 Hb_011671_280 Hb_011671_280 Hb_078954_010--Hb_011671_280 Hb_000809_140 Hb_000809_140 Hb_078954_010--Hb_000809_140 Hb_003747_050 Hb_003747_050 Hb_078954_010--Hb_003747_050 Hb_033053_010 Hb_033053_010 Hb_046109_010--Hb_033053_010 Hb_007574_050 Hb_007574_050 Hb_046109_010--Hb_007574_050 Hb_000069_430 Hb_000069_430 Hb_046109_010--Hb_000069_430 Hb_164926_050 Hb_164926_050 Hb_046109_010--Hb_164926_050 Hb_001019_020 Hb_001019_020 Hb_046109_010--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_046109_010--Hb_002936_030 Hb_002641_050 Hb_002641_050 Hb_004667_040--Hb_002641_050 Hb_004667_040--Hb_000069_430 Hb_025236_020 Hb_025236_020 Hb_004667_040--Hb_025236_020 Hb_002343_020 Hb_002343_020 Hb_004667_040--Hb_002343_020 Hb_005394_010 Hb_005394_010 Hb_032202_050--Hb_005394_010 Hb_005496_160 Hb_005496_160 Hb_032202_050--Hb_005496_160 Hb_033930_010 Hb_033930_010 Hb_032202_050--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_032202_050--Hb_011671_110 Hb_002609_190 Hb_002609_190 Hb_032202_050--Hb_002609_190 Hb_003216_050 Hb_003216_050 Hb_032202_050--Hb_003216_050 Hb_047442_010 Hb_047442_010 Hb_002965_070--Hb_047442_010 Hb_089114_010 Hb_089114_010 Hb_002965_070--Hb_089114_010 Hb_000317_190 Hb_000317_190 Hb_002965_070--Hb_000317_190 Hb_000563_510 Hb_000563_510 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_002965_070--Hb_033930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176504 0.67823 0.710709 0.365802 0.092133 0.0376598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.179455 0.110762

CAGE analysis