Hb_065866_010

Information

Type -
Description -
Location Contig65866: 585-2556
Sequence    

Annotation

kegg
ID fve:101313951
description (R)-specific enoyl-CoA hydratase-like
nr
ID XP_004309889.1
description PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID M5W3G3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026878mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065866_010 0.0 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
2 Hb_007290_080 0.1703211887 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
3 Hb_148909_020 0.1939720592 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_133702_040 0.2097940473 - - -
5 Hb_000836_140 0.2218333909 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
6 Hb_000434_020 0.2224568426 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
7 Hb_060618_010 0.2232348378 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_010815_030 0.2245856532 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
9 Hb_000753_190 0.2250341 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
10 Hb_000483_250 0.2286991947 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
11 Hb_002226_040 0.2338473208 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
12 Hb_021056_010 0.2366526672 - - unnamed protein product [Vitis vinifera]
13 Hb_000692_010 0.2430153965 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
14 Hb_001571_090 0.2463387946 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
15 Hb_023711_010 0.2488802905 - - -
16 Hb_008699_020 0.2494987031 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
17 Hb_001387_020 0.2496991227 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
18 Hb_008318_010 0.2529165004 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
19 Hb_001047_160 0.2550016175 - - -
20 Hb_000010_260 0.2571686083 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]

Gene co-expression network

sample Hb_065866_010 Hb_065866_010 Hb_007290_080 Hb_007290_080 Hb_065866_010--Hb_007290_080 Hb_148909_020 Hb_148909_020 Hb_065866_010--Hb_148909_020 Hb_133702_040 Hb_133702_040 Hb_065866_010--Hb_133702_040 Hb_000836_140 Hb_000836_140 Hb_065866_010--Hb_000836_140 Hb_000434_020 Hb_000434_020 Hb_065866_010--Hb_000434_020 Hb_060618_010 Hb_060618_010 Hb_065866_010--Hb_060618_010 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_000329_020 Hb_000329_020 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_007290_080--Hb_148909_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_000483_250 Hb_000483_250 Hb_148909_020--Hb_000483_250 Hb_000159_070 Hb_000159_070 Hb_148909_020--Hb_000159_070 Hb_008887_040 Hb_008887_040 Hb_148909_020--Hb_008887_040 Hb_148909_020--Hb_060618_010 Hb_000172_420 Hb_000172_420 Hb_148909_020--Hb_000172_420 Hb_001159_150 Hb_001159_150 Hb_133702_040--Hb_001159_150 Hb_011644_010 Hb_011644_010 Hb_133702_040--Hb_011644_010 Hb_003747_060 Hb_003747_060 Hb_133702_040--Hb_003747_060 Hb_000097_010 Hb_000097_010 Hb_133702_040--Hb_000097_010 Hb_000656_340 Hb_000656_340 Hb_133702_040--Hb_000656_340 Hb_000836_140--Hb_000483_250 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_000836_140--Hb_060618_010 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_011224_040 Hb_011224_040 Hb_000434_020--Hb_011224_040 Hb_000500_210 Hb_000500_210 Hb_000434_020--Hb_000500_210 Hb_002526_020 Hb_002526_020 Hb_000434_020--Hb_002526_020 Hb_002759_110 Hb_002759_110 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070 Hb_060618_010--Hb_000483_250 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098284 0.106043 0.0781363 0.216071 0.371354 0.270763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40337 1.47009 0 0.481228 0.313571

CAGE analysis