Hb_065953_010

Information

Type -
Description -
Location Contig65953: 3528-6930
Sequence    

Annotation

kegg
ID cit:102608151
description UPF0655 protein C17G9.12c-like
nr
ID XP_012089380.1
description PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
swissprot
ID F4KFT7
description Probable aminopyrimidine aminohydrolase, mitochondrial OS=Arabidopsis thaliana GN=TNEA_C PE=2 SV=1
trembl
ID A0A0D2PFH2
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G273300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065953_010 0.0 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
2 Hb_000107_050 0.1035902698 - - 60S ribosomal protein L9, putative [Ricinus communis]
3 Hb_001047_100 0.1048878461 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_105386_010 0.1061538282 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_005503_030 0.1083210116 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
6 Hb_000012_020 0.1088074521 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
7 Hb_000290_020 0.113283748 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
8 Hb_143629_010 0.1147235526 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_012092_010 0.1165856699 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
10 Hb_001766_150 0.1191921072 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
11 Hb_007576_040 0.1192139887 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
12 Hb_003025_020 0.1218020152 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_012193_010 0.1218576105 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002233_150 0.1223538094 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
15 Hb_003746_040 0.1235163566 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
16 Hb_003044_100 0.1235784281 - - hypothetical protein F383_08446 [Gossypium arboreum]
17 Hb_023001_050 0.1241939214 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
18 Hb_000141_060 0.124549084 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_001006_170 0.1249751583 - - Endonuclease V, putative [Ricinus communis]
20 Hb_001741_140 0.1256311745 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_065953_010 Hb_065953_010 Hb_000107_050 Hb_000107_050 Hb_065953_010--Hb_000107_050 Hb_001047_100 Hb_001047_100 Hb_065953_010--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_065953_010--Hb_105386_010 Hb_005503_030 Hb_005503_030 Hb_065953_010--Hb_005503_030 Hb_000012_020 Hb_000012_020 Hb_065953_010--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_065953_010--Hb_000290_020 Hb_000933_180 Hb_000933_180 Hb_000107_050--Hb_000933_180 Hb_010128_130 Hb_010128_130 Hb_000107_050--Hb_010128_130 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_001741_140 Hb_001741_140 Hb_000107_050--Hb_001741_140 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000690_080 Hb_000690_080 Hb_000107_050--Hb_000690_080 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_105386_010--Hb_001358_030 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040 Hb_143629_010 Hb_143629_010 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_001142_050 Hb_001142_050 Hb_000012_020--Hb_001142_050 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000976_260 Hb_000976_260 Hb_000012_020--Hb_000976_260 Hb_000012_020--Hb_000290_020 Hb_002639_150 Hb_002639_150 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_000290_020--Hb_008887_050 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1402 0.731889 2.87326 1.83772 4.47562 4.9382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36962 4.14574 2.27113 2.21456 0.332442

CAGE analysis