Hb_066206_010

Information

Type -
Description -
Location Contig66206: 3457-7969
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066206_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000574_290 0.0167712891 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
3 Hb_000043_040 0.0659332885 - - CTV.19 [Citrus trifoliata]
4 Hb_003205_040 0.101970924 - - epoxide hydrolase, putative [Ricinus communis]
5 Hb_085793_010 0.103619307 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
6 Hb_165100_010 0.1865182382 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_028248_010 0.2326097094 - - polyprotein [Oryza australiensis]
8 Hb_000612_050 0.2506023032 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
9 Hb_000832_350 0.2621384651 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_033908_010 0.2884206643 - - -
11 Hb_139605_010 0.2890730026 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_007083_040 0.2891873834 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
13 Hb_033165_010 0.2921310265 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_186064_010 0.2921314808 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001980_040 0.2921516876 - - -
16 Hb_001216_020 0.2921777611 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
17 Hb_001833_030 0.2921852019 - - polyprotein [Oryza australiensis]
18 Hb_015866_010 0.292187971 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_000127_150 0.292190029 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
20 Hb_152910_030 0.292194939 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_066206_010 Hb_066206_010 Hb_000574_290 Hb_000574_290 Hb_066206_010--Hb_000574_290 Hb_000043_040 Hb_000043_040 Hb_066206_010--Hb_000043_040 Hb_003205_040 Hb_003205_040 Hb_066206_010--Hb_003205_040 Hb_085793_010 Hb_085793_010 Hb_066206_010--Hb_085793_010 Hb_165100_010 Hb_165100_010 Hb_066206_010--Hb_165100_010 Hb_028248_010 Hb_028248_010 Hb_066206_010--Hb_028248_010 Hb_000574_290--Hb_000043_040 Hb_000574_290--Hb_003205_040 Hb_000574_290--Hb_085793_010 Hb_000574_290--Hb_165100_010 Hb_000574_290--Hb_028248_010 Hb_000043_040--Hb_003205_040 Hb_000043_040--Hb_085793_010 Hb_000043_040--Hb_165100_010 Hb_000043_040--Hb_028248_010 Hb_003205_040--Hb_085793_010 Hb_003205_040--Hb_165100_010 Hb_003205_040--Hb_028248_010 Hb_085793_010--Hb_165100_010 Hb_085793_010--Hb_028248_010 Hb_165100_010--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00490923 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00692938 0.0187373

CAGE analysis