Hb_066262_020

Information

Type -
Description -
Location Contig66262: 4253-6637
Sequence    

Annotation

kegg
ID sot:102577550
description PVS3, VS1; putative vetispiradiene synthase 5
nr
ID KDP31578.1
description hypothetical protein JCGZ_14803 [Jatropha curcas]
swissprot
ID Q39978
description Vetispiradiene synthase 1 OS=Hyoscyamus muticus PE=1 SV=2
trembl
ID A0A067K977
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14803 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066262_020 0.0 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
2 Hb_064855_010 0.060296678 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000844_020 0.0679492809 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
4 Hb_002067_110 0.069206726 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
5 Hb_001271_040 0.0795359827 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
6 Hb_006616_050 0.0925525297 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
7 Hb_068447_010 0.097318435 - - protein with unknown function [Ricinus communis]
8 Hb_007676_070 0.097361601 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
9 Hb_000796_100 0.0974072843 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_000764_060 0.0974172584 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
11 Hb_000756_040 0.0976865334 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_008078_040 0.097814385 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
13 Hb_011924_010 0.0982269489 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
14 Hb_005204_030 0.0983227639 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
15 Hb_101778_020 0.0993913799 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
16 Hb_007785_020 0.0997926999 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_000035_360 0.0999013289 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
18 Hb_001104_260 0.1002449371 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
19 Hb_000233_060 0.1002956972 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
20 Hb_006586_020 0.1003462644 - - hypothetical protein [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_066262_020 Hb_066262_020 Hb_064855_010 Hb_064855_010 Hb_066262_020--Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_066262_020--Hb_000844_020 Hb_002067_110 Hb_002067_110 Hb_066262_020--Hb_002067_110 Hb_001271_040 Hb_001271_040 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_064855_010--Hb_000844_020 Hb_000796_100 Hb_000796_100 Hb_064855_010--Hb_000796_100 Hb_064855_010--Hb_001271_040 Hb_023827_010 Hb_023827_010 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_000844_020--Hb_002067_110 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_000796_100 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_007785_020 Hb_007785_020 Hb_002067_110--Hb_007785_020 Hb_002067_110--Hb_064855_010 Hb_045810_010 Hb_045810_010 Hb_002067_110--Hb_045810_010 Hb_002067_110--Hb_001271_040 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_001271_040--Hb_068447_010 Hb_006616_050--Hb_064855_010 Hb_006616_050--Hb_000796_100 Hb_006616_050--Hb_000844_020 Hb_006616_050--Hb_001271_040 Hb_006452_140 Hb_006452_140 Hb_006616_050--Hb_006452_140 Hb_007676_070 Hb_007676_070 Hb_068447_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_068447_010--Hb_000764_060 Hb_000756_040 Hb_000756_040 Hb_068447_010--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_068447_010--Hb_008078_040 Hb_068447_010--Hb_011924_010 Hb_005204_030 Hb_005204_030 Hb_068447_010--Hb_005204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278049 10.9897 0 0.167795 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0509299 0 0 1.86875 0

CAGE analysis