Hb_066350_010

Information

Type -
Description -
Location Contig66350: 344-756
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_898257
description hypothetical protein
nr
ID ABR23658.1
description somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
swissprot
ID Q9LS95
description Putative proline-rich receptor-like protein kinase PERK6 OS=Arabidopsis thaliana GN=PERK6 PE=2 SV=2
trembl
ID A6N987
description Somatic embryogenesis receptor-like kinase 4 (Fragment) OS=Rosa hybrid cultivar GN=SERK4 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066350_010 0.0 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
2 Hb_002267_040 0.0678015983 - - -
3 Hb_015026_010 0.0784370507 - - -
4 Hb_062226_080 0.0803327802 - - -
5 Hb_005888_040 0.0820436289 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
6 Hb_009252_110 0.0898822975 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
7 Hb_000501_090 0.090487071 - - -
8 Hb_005900_020 0.0947902788 - - -
9 Hb_001645_100 0.1233372136 - - -
10 Hb_000840_220 0.1319193347 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
11 Hb_012879_010 0.1345805883 - - conserved hypothetical protein [Ricinus communis]
12 Hb_105446_010 0.1424878278 - - -
13 Hb_006890_050 0.1426989967 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
14 Hb_004590_010 0.1453813946 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
15 Hb_021443_020 0.1455025124 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
16 Hb_000504_050 0.1472213019 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
17 Hb_000174_020 0.1498594072 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_000658_020 0.1541472022 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
19 Hb_179118_010 0.1546904845 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
20 Hb_006816_540 0.1549338602 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]

Gene co-expression network

sample Hb_066350_010 Hb_066350_010 Hb_002267_040 Hb_002267_040 Hb_066350_010--Hb_002267_040 Hb_015026_010 Hb_015026_010 Hb_066350_010--Hb_015026_010 Hb_062226_080 Hb_062226_080 Hb_066350_010--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_066350_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_066350_010--Hb_009252_110 Hb_000501_090 Hb_000501_090 Hb_066350_010--Hb_000501_090 Hb_002267_040--Hb_062226_080 Hb_002267_040--Hb_005888_040 Hb_002267_040--Hb_015026_010 Hb_002267_040--Hb_009252_110 Hb_002267_040--Hb_000501_090 Hb_015026_010--Hb_062226_080 Hb_015026_010--Hb_005888_040 Hb_015026_010--Hb_000501_090 Hb_015026_010--Hb_009252_110 Hb_062226_080--Hb_005888_040 Hb_062226_080--Hb_009252_110 Hb_105446_010 Hb_105446_010 Hb_062226_080--Hb_105446_010 Hb_005888_040--Hb_009252_110 Hb_005888_040--Hb_105446_010 Hb_009252_110--Hb_105446_010 Hb_001645_100 Hb_001645_100 Hb_000501_090--Hb_001645_100 Hb_000501_090--Hb_062226_080 Hb_000501_090--Hb_005888_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.3879 0.322764 25.1321 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.42829 0

CAGE analysis