Hb_066768_010

Information

Type -
Description -
Location Contig66768: 2059-2406
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05840g
description mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
nr
ID XP_012087740.1
description PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID O48528
description Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
trembl
ID A0A067JYI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25515 PE=4 SV=1
Gene Ontology
ID GO:0005747
description outer envelope pore protein 16- chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53290: 1044-4025
cDNA
(Sanger)
(ID:Location)		 024_J01.ab1: 1115-2350 , 025_F24.ab1: 1081-4025 , 050_E20.ab1: 1080-4002

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066768_010 0.0 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_004784_020 0.0774198873 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
3 Hb_001250_060 0.0781508341 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
4 Hb_031089_040 0.0807336694 - - thioredoxin H-type 1 [Hevea brasiliensis]
5 Hb_000326_090 0.0844343262 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
6 Hb_000083_170 0.090755117 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
7 Hb_005867_020 0.0968785883 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
8 Hb_003502_090 0.0989282528 - - ATP synthase subunit d, putative [Ricinus communis]
9 Hb_021238_050 0.0990192595 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000162_260 0.0993739745 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
11 Hb_001268_050 0.1004235453 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
12 Hb_001584_190 0.1018102979 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
13 Hb_002296_040 0.1054956667 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
14 Hb_002207_110 0.1060765706 - - -
15 Hb_000479_190 0.1110600373 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003633_030 0.1112178413 - - f-actin capping protein alpha, putative [Ricinus communis]
17 Hb_001935_130 0.1113287096 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
18 Hb_000453_160 0.1114185573 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
19 Hb_004871_080 0.1116281273 - - tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis]
20 Hb_001998_230 0.1129507044 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]

Gene co-expression network

sample Hb_066768_010 Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_066768_010--Hb_004784_020 Hb_001250_060 Hb_001250_060 Hb_066768_010--Hb_001250_060 Hb_031089_040 Hb_031089_040 Hb_066768_010--Hb_031089_040 Hb_000326_090 Hb_000326_090 Hb_066768_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_066768_010--Hb_000083_170 Hb_005867_020 Hb_005867_020 Hb_066768_010--Hb_005867_020 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_004784_020--Hb_031089_040 Hb_005278_020 Hb_005278_020 Hb_004784_020--Hb_005278_020 Hb_019762_020 Hb_019762_020 Hb_004784_020--Hb_019762_020 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_129672_010 Hb_129672_010 Hb_001250_060--Hb_129672_010 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_001250_060--Hb_000326_090 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080 Hb_002207_110 Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_000326_090--Hb_000083_170 Hb_000326_090--Hb_002296_040 Hb_000326_090--Hb_005867_020 Hb_000326_090--Hb_031089_040 Hb_037887_010 Hb_037887_010 Hb_000083_170--Hb_037887_010 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_005867_020--Hb_002207_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.569 65.6518 151.648 467.329 243.957 452.792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
371.596 409.79 269.301 183.658 128.159

CAGE analysis