Hb_066784_020

Information

Type -
Description -
Location Contig66784: 17946-18452
Sequence    

Annotation

kegg
ID rcu:RCOM_0851730
description hypothetical protein
nr
ID XP_002517365.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUC0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0851730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066784_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003529_210 0.0571190691 - - -
3 Hb_067345_050 0.0914500419 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
4 Hb_064951_010 0.117416733 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
5 Hb_076583_010 0.1575752158 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
6 Hb_001899_010 0.1576978222 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
7 Hb_001135_270 0.1612014574 - - -
8 Hb_005799_030 0.168949411 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
9 Hb_179763_010 0.1772140574 - - -
10 Hb_000563_280 0.1920311175 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
11 Hb_081636_010 0.1942852856 - - -
12 Hb_182310_010 0.2021216432 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_010997_050 0.2214673393 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
14 Hb_001584_230 0.2304801699 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
15 Hb_027394_010 0.2343856512 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_068347_020 0.2343869002 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_009066_010 0.2347381094 - - -
18 Hb_021068_020 0.2372505822 - - -
19 Hb_009686_010 0.2375869751 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
20 Hb_136856_010 0.2407696371 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]

Gene co-expression network

sample Hb_066784_020 Hb_066784_020 Hb_003529_210 Hb_003529_210 Hb_066784_020--Hb_003529_210 Hb_067345_050 Hb_067345_050 Hb_066784_020--Hb_067345_050 Hb_064951_010 Hb_064951_010 Hb_066784_020--Hb_064951_010 Hb_076583_010 Hb_076583_010 Hb_066784_020--Hb_076583_010 Hb_001899_010 Hb_001899_010 Hb_066784_020--Hb_001899_010 Hb_001135_270 Hb_001135_270 Hb_066784_020--Hb_001135_270 Hb_003529_210--Hb_064951_010 Hb_003529_210--Hb_001899_010 Hb_003529_210--Hb_067345_050 Hb_003529_210--Hb_076583_010 Hb_179763_010 Hb_179763_010 Hb_003529_210--Hb_179763_010 Hb_067345_050--Hb_001135_270 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030 Hb_182310_010 Hb_182310_010 Hb_067345_050--Hb_182310_010 Hb_064951_010--Hb_076583_010 Hb_010997_050 Hb_010997_050 Hb_064951_010--Hb_010997_050 Hb_089491_010 Hb_089491_010 Hb_064951_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_064951_010--Hb_009268_110 Hb_076583_010--Hb_010997_050 Hb_076583_010--Hb_009268_110 Hb_076583_010--Hb_089491_010 Hb_013727_010 Hb_013727_010 Hb_076583_010--Hb_013727_010 Hb_001899_010--Hb_005799_030 Hb_001899_010--Hb_001135_270 Hb_001899_010--Hb_179763_010 Hb_003529_220 Hb_003529_220 Hb_001899_010--Hb_003529_220 Hb_001135_270--Hb_005799_030 Hb_001135_270--Hb_081636_010 Hb_001584_230 Hb_001584_230 Hb_001135_270--Hb_001584_230 Hb_000123_390 Hb_000123_390 Hb_001135_270--Hb_000123_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96804 0 0 0 19.2647 31.4684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis