Hb_066913_010

Information

Type -
Description -
Location Contig66913: 5-728
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03150g
description hypothetical protein
nr
ID XP_006380965.1
description hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GBE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03150g PE=4 SV=1
Gene Ontology
ID GO:0016772
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066913_010 0.0 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
2 Hb_002388_010 0.1360347216 - - -
3 Hb_002687_080 0.1475627879 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
4 Hb_133724_010 0.1513977696 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002192_090 0.1539745292 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
6 Hb_000363_330 0.1642199726 - - -
7 Hb_145629_010 0.1649031583 - - -
8 Hb_060715_010 0.1654802716 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
9 Hb_000243_040 0.1671657761 - - -
10 Hb_002344_130 0.1724948594 - - PREDICTED: copper transporter 5 [Jatropha curcas]
11 Hb_000111_030 0.1763603297 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
12 Hb_130613_010 0.17760211 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
13 Hb_004195_230 0.1782038809 - - conserved hypothetical protein [Ricinus communis]
14 Hb_146675_010 0.1782290935 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
15 Hb_000327_290 0.179331525 - - Histone H4 [Triticum urartu]
16 Hb_003925_070 0.179362706 - - ATOZI1, putative [Ricinus communis]
17 Hb_004883_050 0.1800449992 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
18 Hb_004669_030 0.1811621754 - - -
19 Hb_007123_060 0.1847401143 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
20 Hb_085972_010 0.1851358087 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]

Gene co-expression network

sample Hb_066913_010 Hb_066913_010 Hb_002388_010 Hb_002388_010 Hb_066913_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_066913_010--Hb_002687_080 Hb_133724_010 Hb_133724_010 Hb_066913_010--Hb_133724_010 Hb_002192_090 Hb_002192_090 Hb_066913_010--Hb_002192_090 Hb_000363_330 Hb_000363_330 Hb_066913_010--Hb_000363_330 Hb_145629_010 Hb_145629_010 Hb_066913_010--Hb_145629_010 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002388_010--Hb_002192_090 Hb_002388_010--Hb_133724_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180 Hb_133724_010--Hb_002192_090 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_002192_090--Hb_099878_050 Hb_000363_330--Hb_130613_010 Hb_001911_040 Hb_001911_040 Hb_000363_330--Hb_001911_040 Hb_004883_050 Hb_004883_050 Hb_000363_330--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_000363_330--Hb_012760_130 Hb_000363_330--Hb_145629_010 Hb_000481_050 Hb_000481_050 Hb_145629_010--Hb_000481_050 Hb_002344_130 Hb_002344_130 Hb_145629_010--Hb_002344_130 Hb_003938_160 Hb_003938_160 Hb_145629_010--Hb_003938_160 Hb_001135_140 Hb_001135_140 Hb_145629_010--Hb_001135_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38143 1.2385 1.12877 5.35994 0.94118 3.4203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24438 2.44088 0.665804 0.860254 0

CAGE analysis