Hb_066920_030

Information

Type -
Description -
Location Contig66920: 4798-13189
Sequence    

Annotation

kegg
ID rcu:RCOM_0545900
description hypothetical protein
nr
ID XP_012075120.1
description PREDICTED: adagio protein 1 [Jatropha curcas]
swissprot
ID Q94BT6
description Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2
trembl
ID A0A067KGL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10355 PE=4 SV=1
Gene Ontology
ID GO:0005515
description adagio protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53347: 4908-13167 , PASA_asmbl_53348: 4908-6692 , PASA_asmbl_53349: 5935-6142 , PASA_asmbl_53350: 6166-6691
cDNA
(Sanger)
(ID:Location)		 009_F06.ab1: 11311-11977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066920_030 0.0 - - PREDICTED: adagio protein 1 [Jatropha curcas]
2 Hb_001404_110 0.0610192313 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
3 Hb_001723_100 0.0610324897 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
4 Hb_005977_070 0.0676621241 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
5 Hb_004030_080 0.0701911908 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
6 Hb_002830_010 0.0711903002 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
7 Hb_000347_400 0.073599009 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_002272_030 0.0751689882 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
9 Hb_009658_030 0.07560397 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
10 Hb_020178_040 0.0772610527 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005582_040 0.0785824829 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
12 Hb_001217_050 0.0805914694 - - actin binding protein, putative [Ricinus communis]
13 Hb_062226_070 0.0813735166 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
14 Hb_001716_040 0.0823336255 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
15 Hb_004435_030 0.083547763 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
16 Hb_000028_130 0.084181693 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
17 Hb_001789_150 0.0865397902 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
18 Hb_001635_120 0.0875419431 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
19 Hb_001865_070 0.088062375 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
20 Hb_012632_010 0.0885390132 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]

Gene co-expression network

sample Hb_066920_030 Hb_066920_030 Hb_001404_110 Hb_001404_110 Hb_066920_030--Hb_001404_110 Hb_001723_100 Hb_001723_100 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_001404_110--Hb_001723_100 Hb_001404_110--Hb_002830_010 Hb_000008_440 Hb_000008_440 Hb_001404_110--Hb_000008_440 Hb_002272_030 Hb_002272_030 Hb_001404_110--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_001404_110--Hb_020178_040 Hb_001723_100--Hb_020178_040 Hb_001723_100--Hb_002272_030 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_004204_010 Hb_004204_010 Hb_005977_070--Hb_004204_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_009658_030 Hb_009658_030 Hb_005977_070--Hb_009658_030 Hb_004705_020 Hb_004705_020 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_004030_080--Hb_002830_010 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_002830_010--Hb_005582_040 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_001473_110 Hb_001473_110 Hb_000347_400--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3442 50.6587 23.4504 42.3383 18.0366 25.9825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9661 25.7475 45.76 33.3084 43.2647

CAGE analysis