Hb_066967_020

Information

Type -
Description -
Location Contig66967: 21028-29282
Sequence    

Annotation

kegg
ID rcu:RCOM_1165000
description RAB6-interacting protein, putative
nr
ID XP_002523956.1
description RAB6-interacting protein, putative [Ricinus communis]
swissprot
ID F4KEW8
description Protein NETWORKED 4A OS=Arabidopsis thaliana GN=NET4A PE=2 SV=1
trembl
ID B9SD87
description RAB6-interacting protein, putative OS=Ricinus communis GN=RCOM_1165000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53374: 25479-26062 , PASA_asmbl_53375: 26740-27102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066967_020 0.0 - - RAB6-interacting protein, putative [Ricinus communis]
2 Hb_021650_010 0.1159064899 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
3 Hb_006555_040 0.1161986577 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
4 Hb_001232_150 0.1166051749 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
5 Hb_029142_030 0.1166681115 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
6 Hb_000140_440 0.1209574614 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
7 Hb_000694_030 0.1227331327 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
8 Hb_002255_040 0.1234371576 - - PREDICTED: biotin synthase [Jatropha curcas]
9 Hb_000012_270 0.1248787659 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
10 Hb_006326_050 0.1258487912 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
11 Hb_002870_020 0.1273636737 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
12 Hb_005527_010 0.1276040505 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002498_140 0.1328080562 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
14 Hb_000061_150 0.1348270624 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
15 Hb_002105_010 0.1367798955 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004994_080 0.1376958755 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000445_070 0.1377911189 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
18 Hb_005975_010 0.1399774338 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
19 Hb_030131_020 0.1407632302 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
20 Hb_000340_130 0.1431386184 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_066967_020 Hb_066967_020 Hb_021650_010 Hb_021650_010 Hb_066967_020--Hb_021650_010 Hb_006555_040 Hb_006555_040 Hb_066967_020--Hb_006555_040 Hb_001232_150 Hb_001232_150 Hb_066967_020--Hb_001232_150 Hb_029142_030 Hb_029142_030 Hb_066967_020--Hb_029142_030 Hb_000140_440 Hb_000140_440 Hb_066967_020--Hb_000140_440 Hb_000694_030 Hb_000694_030 Hb_066967_020--Hb_000694_030 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270 Hb_006555_040--Hb_000140_440 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_004994_080 Hb_004994_080 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_000445_070 Hb_000445_070 Hb_001232_150--Hb_000445_070 Hb_001232_150--Hb_000051_060 Hb_000640_160 Hb_000640_160 Hb_001232_150--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001232_150--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_001232_150--Hb_005731_110 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_011249_030 Hb_011249_030 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_005527_010 Hb_005527_010 Hb_000694_030--Hb_005527_010 Hb_006618_070 Hb_006618_070 Hb_000694_030--Hb_006618_070 Hb_002701_120 Hb_002701_120 Hb_000694_030--Hb_002701_120 Hb_001959_240 Hb_001959_240 Hb_000694_030--Hb_001959_240 Hb_000694_030--Hb_029142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0496 3.41319 27.6972 5.98067 7.9031 9.17114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82621 4.0058 5.55694 4.41542 11.9517

CAGE analysis