Hb_067193_010

Information

Type -
Description -
Location Contig67193: 3703-19597
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53469: 3850-19482 , PASA_asmbl_53470: 13407-13604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067193_010 0.0 - - -
2 Hb_001221_150 0.0635539888 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
3 Hb_005731_090 0.0645831859 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
4 Hb_000856_140 0.0728137902 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
5 Hb_001307_080 0.0760791494 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
6 Hb_004453_110 0.0760947775 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
7 Hb_003040_020 0.0785361632 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_008112_030 0.0789821459 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004429_160 0.0793761644 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
10 Hb_001417_050 0.0815236271 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_004659_080 0.0815291775 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
12 Hb_000286_170 0.0830188138 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
13 Hb_030627_060 0.0853859412 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_000914_080 0.0855198533 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_002392_030 0.0870076987 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
16 Hb_002374_320 0.0870646643 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
17 Hb_006478_060 0.0873270775 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
18 Hb_001301_090 0.087823673 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000191_130 0.0882813154 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
20 Hb_148909_030 0.0884384074 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_067193_010 Hb_067193_010 Hb_001221_150 Hb_001221_150 Hb_067193_010--Hb_001221_150 Hb_005731_090 Hb_005731_090 Hb_067193_010--Hb_005731_090 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_004453_110 Hb_004453_110 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_001028_070 Hb_001028_070 Hb_001221_150--Hb_001028_070 Hb_000120_610 Hb_000120_610 Hb_001221_150--Hb_000120_610 Hb_004659_080 Hb_004659_080 Hb_001221_150--Hb_004659_080 Hb_000594_020 Hb_000594_020 Hb_001221_150--Hb_000594_020 Hb_001417_050 Hb_001417_050 Hb_001221_150--Hb_001417_050 Hb_002174_020 Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_000032_010 Hb_000032_010 Hb_000856_140--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000856_140--Hb_019153_020 Hb_000856_140--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_001307_080--Hb_003040_020 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_004453_110--Hb_002174_020 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_003040_020--Hb_004429_160 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_003040_020--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8623 17.7495 9.99925 11.3707 31.9918 22.1551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14805 6.94643 7.09424 14.6284 10.2842

CAGE analysis