Hb_067197_020

Information

Type -
Description -
Location Contig67197: 2886-4072
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53472: 4918-5137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067197_020 0.0 - - -
2 Hb_010896_010 0.0111383376 - - -
3 Hb_001268_360 0.0182290934 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
4 Hb_081445_010 0.020147951 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
5 Hb_101733_020 0.0207544486 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
6 Hb_002127_010 0.0273846522 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
7 Hb_000672_070 0.0299757832 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
8 Hb_168436_010 0.0359289319 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
9 Hb_021409_060 0.0406480303 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
10 Hb_048826_010 0.0410556854 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
11 Hb_002582_090 0.0437171481 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
12 Hb_132148_010 0.0533954267 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
13 Hb_004899_160 0.0615431947 - - -
14 Hb_156055_020 0.0692590435 - - conserved hypothetical protein [Ricinus communis]
15 Hb_119789_010 0.0781082528 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
16 Hb_003766_030 0.0788603214 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
17 Hb_001373_120 0.0832418244 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
18 Hb_008637_010 0.0875068503 - - Major latex protein, putative [Ricinus communis]
19 Hb_000264_200 0.0939512013 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
20 Hb_000120_140 0.0942205188 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]

Gene co-expression network

sample Hb_067197_020 Hb_067197_020 Hb_010896_010 Hb_010896_010 Hb_067197_020--Hb_010896_010 Hb_001268_360 Hb_001268_360 Hb_067197_020--Hb_001268_360 Hb_081445_010 Hb_081445_010 Hb_067197_020--Hb_081445_010 Hb_101733_020 Hb_101733_020 Hb_067197_020--Hb_101733_020 Hb_002127_010 Hb_002127_010 Hb_067197_020--Hb_002127_010 Hb_000672_070 Hb_000672_070 Hb_067197_020--Hb_000672_070 Hb_010896_010--Hb_001268_360 Hb_010896_010--Hb_002127_010 Hb_168436_010 Hb_168436_010 Hb_010896_010--Hb_168436_010 Hb_021409_060 Hb_021409_060 Hb_010896_010--Hb_021409_060 Hb_010896_010--Hb_081445_010 Hb_001268_360--Hb_002127_010 Hb_001268_360--Hb_168436_010 Hb_001268_360--Hb_021409_060 Hb_001268_360--Hb_081445_010 Hb_081445_010--Hb_101733_020 Hb_081445_010--Hb_000672_070 Hb_048826_010 Hb_048826_010 Hb_081445_010--Hb_048826_010 Hb_002582_090 Hb_002582_090 Hb_081445_010--Hb_002582_090 Hb_101733_020--Hb_000672_070 Hb_101733_020--Hb_048826_010 Hb_101733_020--Hb_002582_090 Hb_101733_020--Hb_010896_010 Hb_002127_010--Hb_168436_010 Hb_002127_010--Hb_021409_060 Hb_004899_160 Hb_004899_160 Hb_002127_010--Hb_004899_160 Hb_000672_070--Hb_048826_010 Hb_000672_070--Hb_002582_090 Hb_132148_010 Hb_132148_010 Hb_000672_070--Hb_132148_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.887016 0.207181 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis